Structure of PDB 5gqf Chain B Binding Site BS02

Receptor Information
>5gqf Chain B (length=582) Species: 1679 (Bifidobacterium longum subsp. longum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GTTYYVSSAHGDDANAGTSENAPWKSLTKVNDIASDLGPGDSVLLEYGSE
FNDQYLHIKDTAGNADAPITISAYGDADEGKPVIASNGVKGSQWEQDYRA
NVGNHKNKGTVSTTLLLKDVSYITVSNLEITNDDADVYDPIDTWKWTDTP
DSDGTKLDRSASRMDRTGVAGIAENGATMSNVTLDNLYIHDVDGNIYNKH
MANGGIYFMAHYPMENTSAETDVWLREHVSRFDHVTIRNSTVKDVDRWGI
AVGYTAYLNYIDANYGDGSIDDALIAKYGSTNVRIENNYVKGAGGDAITL
MYCDRPVIEHNVGDSVSKHINTQDYTQPGSYGGRVAAGIWPWRCKDPVFQ
YNEMYNNLNAEHGNGDGQAWDADYGDGTLYQYNYSYGNSFASLMICNWYA
VNTTFRYNISQNDRQGVFDLPSNGPGNHIYNNTVYVDADSQVLTKRSNSQ
SLFENNIFINATNTKKTETWNRGSQNGGQTYDNNMYVNYANKPTSDANAI
EADDVSAVLAGAGSAPTSALKSGAEHARTGEKAAFDGYRPVAGSKAINAG
KVVSDLNDYAVENDFLGNAVKGRPDLGAVEAA
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5gqf Chain B Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5gqf Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum
Resolution1.82 Å
Binding residue
(original residue number in PDB)		D178 D179 V182 D238
Binding residue
(residue number reindexed from 1)		D133 D134 V137 D193
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.140: lacto-N-biosidase.
External links