Structure of PDB 5fny Chain B Binding Site BS02

Receptor Information
>5fny Chain B (length=218) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YRDQPLGELALSIPRASALFRKYDMDYAAGGKQTLARAAARKELDVEVIE
AELAKLAEQPIEKDWRSAPLAEIIDHIIVRYHDRHREQLPELILQATKVE
RVHADKPSVPKGLTKYLTMLHEELSSHMMKEEQILFPMIKQGMGSQAMGP
ISVMESEHDEAGELLEVIKHTTNNVTPPPEACTTWKAMYNGINELIDDLM
DHISLENNVLFPRALAGE
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain5fny Chain B Residue 1222 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5fny Crystal Structure of the Repair of Iron Centers Protein Ytfe and its Interaction with No
Resolution2.01 Å
Binding residue
(original residue number in PDB)		H129 E133 H160 E208
Binding residue
(residue number reindexed from 1)		H127 E131 H158 E206
Annotation score1
Enzymatic activity
Enzyme Commision number 1.7.2.5: nitric-oxide reductase (cytochrome c).
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0005515 protein binding
GO:0046872 metal ion binding
GO:0098809 nitrite reductase activity
Biological Process
GO:0006979 response to oxidative stress
GO:0030091 protein repair
GO:0051409 response to nitrosative stress
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5fny, PDBe:5fny, PDBj:5fny
PDBsum5fny
PubMed27246459
UniProtP69506|YTFE_ECOLI Iron-sulfur cluster repair protein YtfE (Gene Name=ytfE)

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