Structure of PDB 5f8r Chain B Binding Site BS02

Receptor Information
>5f8r Chain B (length=421) Species: 210 (Helicobacter pylori) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YENLSKLLTRYSTLNTLIKLSADPSAINAARENLGASAKNLIGDTKNSPA
YQAVLLAINAAVGFWNVLGYATQCGGNANGQESTSSTTIFNNEPGYRSTS
ITCSLNRYKPGYYGPMSIENFKKLNEAYQILQTALNKGLPALKENNGTVS
VTYTYTCSGEGNDNCLPKVTGVDNQNGGTKTKTQTIDGKTVTTTISSKVV
DSQAKGNTTRVSYTEITNKLDGVPDSAQALLAQASTLINTINTACPYFSV
TNKSGGPQMEPTRGKLCGFTEEISAIQKMITDAQELVNQTSVINEHEQST
PVGGNNGKPFNPFTDASFAQGMLANASAQAKMLNLAHQVGQTINPDNLTG
TFKNFVTGFLATCNNKGSPPGTVTTQTFASGCAYVEQTITNLNNSIAHFG
TQEQQIQQAENIADTLVNFGS
Ligand information
Ligand IDFUC
InChIInChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3+,4+,5-,6+/m0/s1
InChIKeySHZGCJCMOBCMKK-SXUWKVJYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341C[C@@H]1O[C@@H](O)[C@@H](O)[C@H](O)[C@@H]1O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)C
OpenEye OEToolkits 1.5.0CC1C(C(C(C(O1)O)O)O)O
OpenEye OEToolkits 1.5.0C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O)O)O)O
CACTVS 3.341C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
FormulaC6 H12 O5
Namealpha-L-fucopyranose;
alpha-L-fucose;
6-deoxy-alpha-L-galactopyranose;
L-fucose;
fucose
ChEMBLCHEMBL1232862
DrugBankDB04473
ZINCZINC000001532814
PDB chain5f8r Chain F Residue 5 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5f8r Structural Insights into Polymorphic ABO Glycan Binding by Helicobacter pylori.
Resolution2.44 Å
Binding residue
(original residue number in PDB)		S190 G191 N194 Y245 T246
Binding residue
(residue number reindexed from 1)		S158 G159 N162 Y213 T214
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links