Structure of PDB 5ekp Chain B Binding Site BS02

Receptor Information
>5ekp Chain B (length=299) Species: 1111708 (Synechocystis sp. PCC 6803 substr. Kazusa) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FQSNATIELSIVIPMYNEEDNLEHLFARLLEVLTPLKITYEIICVNDGSK
DKTLKQLIDCYQSNRQIKIVNLSRNFGKEIALSAGIDYAQGNAVIPIDAD
LQDPPELIHELVDKWREGYDIVYATRRSQFTAKMFYKVIGRMTEIKIPPN
TGDFRLMDRKVVNAIKQLPERTRFMKGLFAWVGYRQTFVLFDRTKWNYWK
LWNFALDGIFSFSLLPLKVWTYLGSIISLLSLAYASFLILVDVPGYASLM
VAILFLGGVQLISLGVIGEYLGRVYEEVKARPLYLVSDLWGLEYLPLEK
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5ekp Chain B Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5ekp Structure of the polyisoprenyl-phosphate glycosyltransferase GtrB and insights into the mechanism of catalysis.
Resolution3.194 Å
Binding residue
(original residue number in PDB)		D96 Q98
Binding residue
(residue number reindexed from 1)		D100 Q102
Annotation score4
Enzymatic activity
Enzyme Commision number 2.4.-.-
Gene Ontology
Molecular Function
GO:0016757 glycosyltransferase activity
Cellular Component
GO:0005886 plasma membrane

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Molecular Function
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Cellular Component
External links
PDB RCSB:5ekp, PDBe:5ekp, PDBj:5ekp
PDBsum5ekp
PubMed26729507
UniProtQ55487|Y501_SYNY3 Uncharacterized glycosyltransferase sll0501 (Gene Name=sll0501)

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