Structure of PDB 5dj3 Chain B Binding Site BS02

Receptor Information

>5dj3 Chain B (length=351) Species: 141454 (Streptomyces wadayamensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

LNIADGHARQALSPGQQKIVNELPVLWAESEQRPVQQIESEAHQAYFTLL
GQHGYPAEPGRVLSCYSSSVSMEILARSLSASVDRVALVHPTFDNIADLL
RGNGLDLVPVEEDALHGADLSAELLSSVGCVFVTTPNNPTGRVLAEERLR
RLAEQCAEHGTVLALDTSFRGFDAAAHYDHYAVLQEAGCRWVVIEDTGKL
WPTLDLKAGLLVFSEDIGLPVEKIYSDILLGVSPLILALIREFSRDAADG
GLADLHAFILHNRSVVRRALAGVEGVSFPDPESRSSVERVAFAGRTGTEV
WEELQRHHVFALPCRQFHWAEPSDGDHMVRIALSRSTEPLEKSVQVLRTV
L

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

5dj3 Chain B Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5dj3 Streptomyces wadayamensis MppP Is a Pyridoxal 5'-Phosphate-Dependent l-Arginine alpha-Deaminase, gamma-Hydroxylase in the Enduracididine Biosynthetic Pathway.
Resolution	2.227 Å
Binding residue (original residue number in PDB)	D116 D120
Binding residue (residue number reindexed from 1)	D94 D98
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0008483	transaminase activity
GO:0030170	pyridoxal phosphate binding
GO:0046872	metal ion binding

	Biological Process
GO:0006520	amino acid metabolic process
GO:0009058	biosynthetic process

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Molecular Function

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Biological Process

External links

PDB	RCSB:5dj3, PDBe:5dj3, PDBj:5dj3
PDBsum	5dj3
PubMed	26551990
UniProt	A0A0X1KHF5

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