Structure of PDB 5d9i Chain B Binding Site BS02

Receptor Information
>5d9i Chain B (length=132) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GSKVEDPKDFPSELLSFLSHAVFSNRTLACFAIYTTKEKAALLYKKIMEK
YSVTFISRHNSYNHNILFFLTPHRHRVSAINNYAQKLCTFSFLICKGVNK
EYLMYSALTRDPFSVIEESLPGGLKEHDFNPE
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5d9i Chain B Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5d9i Structure-based analysis of the interaction between the simian virus 40 T-antigen origin binding domain and single-stranded DNA.
Resolution1.7 Å
Binding residue
(original residue number in PDB)		K167 A212 Q213 C216
Binding residue
(residue number reindexed from 1)		K39 A84 Q85 C88
Annotation score1
Enzymatic activity
Enzyme Commision number 3.6.4.-
Gene Ontology
Molecular Function
GO:0003688 DNA replication origin binding
Biological Process
GO:0006260 DNA replication

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Molecular Function
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Biological Process
External links
PDB RCSB:5d9i, PDBe:5d9i, PDBj:5d9i
PDBsum5d9i
PubMed20980496
UniProtP03070|LT_SV40 Large T antigen

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