Structure of PDB 5d4y Chain B Binding Site BS02

Receptor Information
>5d4y Chain B (length=312) Species: 417443 (environmental samples) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GLKDAYKDYFKIGVAVNNRNVADPDQIKVVLREFNSITAENAMKPQPTEP
KKGEFNWEDADKIADFCRANGIKMRGHTLMWHSQIGSWMYQKGNLLSKEE
FYANMKHHIQAIVNRYKDVVYCWDVVNEAVADSPVYPGRPELRNSPMYQI
AGEEFIYKAFEYAHEADPDALLFYNDYNDAEPAKSQRIYNLVKRMKDAGV
PIDGIGMQAHYNVYGPTMKEVDDAIKLYSTVVDHIHLTELDIRINVSDWE
RTLQQDQYVQLFKVLRKHKDVIDCVTFWNVSDKDSWLGVRNYPLLFDENY
KPKQAYNAVKNF
Ligand information
Ligand IDXYP
InChIInChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3+,4-,5-/m1/s1
InChIKeySRBFZHDQGSBBOR-KKQCNMDGSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C1C(C(C(C(O1)O)O)O)O
CACTVS 3.341O[C@@H]1CO[C@@H](O)[C@H](O)[C@H]1O
OpenEye OEToolkits 1.5.0C1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O
CACTVS 3.341O[CH]1CO[CH](O)[CH](O)[CH]1O
ACDLabs 10.04OC1C(O)COC(O)C1O
FormulaC5 H10 O5
Namebeta-D-xylopyranose;
beta-D-xylose;
D-xylose;
xylose
ChEMBL
DrugBank
ZINCZINC000001529215
PDB chain5d4y Chain D Residue 2 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5d4y Structural insight into potential cold adaptation mechanism through a psychrophilic glycoside hydrolase family 10 endo-beta-1,4-xylanase.
Resolution2.5 Å
Binding residue
(original residue number in PDB)
K46 H79 W83 E132 Q212 E243 W297 W305
Binding residue
(residue number reindexed from 1)
K44 H77 W81 E128 Q208 E239 W278 W286
Annotation score4
Gene Ontology
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UnboundLocalError
Python 3.6.8: /usr/bin/python3
Fri Nov 15 17:28:52 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5d4y', asym_id = 'B', bs = 'BS02', title = 'Structural insight into potential cold adaptatio...side hydrolase family 10 endo-beta-1,4-xylanase. '
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5d4y', asym_id='B', bs='BS02', title='Structural insight into potential cold adaptatio...side hydrolase family 10 endo-beta-1,4-xylanase. ')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0004553,0005975', uniprot = '', pdbid = '5d4y', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004553,0005975', uniprot='', pdbid='5d4y', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>