Structure of PDB 5d1p Chain B Binding Site BS02

Receptor Information
>5d1p Chain B (length=375) Species: 187420 (Methanothermobacter thermautotrophicus str. Delta H) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DIPFDLIQERTGVPSSRLKVAFARGSLRLLESAGMQALLFKKPLGDLEAG
TVIYLGDETEVIRGFPKIRRTLLLSPTIQEHFRDRVAVEEKMNGYNVRIA
CLSSGETVALTRGGHVCPFTTRKAQELLDLSEFFREHPDLVICGEMIGRD
NPYVSQDYPEVGPLGFRVFDLREKNTNRPLPVEERRALLDSYGLPNVRLF
GVYPIEEAASEVADIIRALGMAGREGVVMKDPSMEVPPLKYTSSQAHARE
LAYAFSYPFDFGRPFFFSRVIREGFQAYELDESDDETRERARRLGEAIIY
PMLERIKSISAGEAAYEDTVIDVEDREAAEEFIRHLVRLGVSATLADYRD
GRATIRRFYQSTTDRINNYLKGGLY
Ligand information
Ligand IDSO4
InChIInChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)/p-2
InChIKeyQAOWNCQODCNURD-UHFFFAOYSA-L
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0[O-]S(=O)(=O)[O-]
CACTVS 3.341[O-][S]([O-])(=O)=O
ACDLabs 10.04[O-]S([O-])(=O)=O
FormulaO4 S
NameSULFATE ION
ChEMBL
DrugBankDB14546
ZINC
PDB chain5d1p Chain B Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5d1p Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis.
Resolution2.199 Å
Binding residue
(original residue number in PDB)		K73 I74 X97 R118 K246
Binding residue
(residue number reindexed from 1)		K67 I68 X91 R112 K240
Annotation score3
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5d1p, PDBe:5d1p, PDBj:5d1p
PDBsum5d1p
PubMed26896806
UniProtO27289

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