Structure of PDB 5b0s Chain B Binding Site BS02

Receptor Information
>5b0s Chain B (length=355) Species: 272626 (Listeria innocua Clip11262) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MNIYRYEENPLITPLDVKPIHEGFEVIGAFNGGVAEYNGEVLLLLRVAEK
PVSEDPEIVLAPVYNAKNKELELQSFRLDDENYDFEDPRMIRSKAKLEGF
SYLTSLSYIRIARSKDGHHFTLDEKPFLYPFNEYQTFGIEDARVTQIGDT
YHVNFSAVSEFGVADALVTTKDFENLEYQGNIFAPENKDVLIFPEKINGK
YYALHRPSLKSIGNLDIWIASSPDLRSFGDHRHLLGIRPGEYDSGRVGGG
CVPIKTEEGWLILYHGATEENRYVMGAALLDLNDPTIVLKRTKTPILEPV
ADYEKNGFFGDVVFACGAIQEGDTLHMYYGVADTSMAGCDMKISEILHQL
EVEAK
Ligand information
Ligand IDBMA
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-RWOPYEJCSA-N
SMILES
SoftwareSMILES
CACTVS 3.341OC[C@H]1O[C@@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)O)O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namebeta-D-mannopyranose;
beta-D-mannose;
D-mannose;
mannose
ChEMBL
DrugBank
ZINCZINC000003830679
PDB chain5b0s Chain D Residue 2 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5b0s Characterization and crystal structure determination of beta-1,2-mannobiose phosphorylase from Listeria innocua
Resolution2.1 Å
Binding residue
(original residue number in PDB)		R46 E140 K188
Binding residue
(residue number reindexed from 1)		R46 E140 K188
Annotation score5
Enzymatic activity
Enzyme Commision number 2.4.1.339: beta-1,2-mannobiose phosphorylase.
Gene Ontology
Molecular Function
GO:0016757 glycosyltransferase activity

View graph for
Molecular Function
External links
PDB RCSB:5b0s, PDBe:5b0s, PDBj:5b0s
PDBsum5b0s
PubMed26632508
UniProtQ92DF6|BMBP_LISIN Beta-1,2-mannobiose phosphorylase (Gene Name=lin0857)

[Back to BioLiP]