Structure of PDB 4yde Chain B Binding Site BS02

Receptor Information
>4yde Chain B (length=411) Species: 237561 (Candida albicans SC5314) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KSPIIDITKYFSPTVESQMDLELIILNEYYLKTHQHHNYFYIDAHLKYIL
SSLIDPMPSGYQVLDVNHSWMIYWLLNSYYLIQNPTMEINQSILDLIVNK
ITKCINYGDSLSGVPFDGIGGGNNQLGHLASTYAAILTLILTDQYELLDN
LRELIRDWLLTLKKRSSCGSGASFIMHENGEMDARSTYCALIIINLLNLT
NLDPLIDGVENWLNSCQTYEGGFSNIPNTEAHGGYTYCALASYFLLYDNR
KQFSVCWEKLLEWSVHRQHELEGGVDGRTNKLVDACYGFWIGGLSPLLQL
IIMNSQQQEVKVFDEEKLRQYLLIIAQDESGGFKDKPGKQVDYYHTNYSL
SGLSILEHSYKFSQDDEGRSLAFQIDVENFTNPIHPVFGIPIKFVKKCHD
YFKLKPISKPK
Ligand information
Ligand ID4C7
InChIInChI=1S/C15H34O7P2/c1-13(2)7-5-8-14(3)9-6-10-15(4)11-12-21-24(19,20)22-23(16,17)18/h13-15H,5-12H2,1-4H3,(H,19,20)(H2,16,17,18)/t14-,15+/m0/s1
InChIKeyQLJFEPYMTKDKMH-LSDHHAIUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.9.2C[C@H](CCC[C@@H](C)CCOP(=O)(O)OP(=O)(O)O)CCCC(C)C
OpenEye OEToolkits 1.9.2CC(C)CCCC(C)CCCC(C)CCOP(=O)(O)OP(=O)(O)O
CACTVS 3.385CC(C)CCC[C@H](C)CCC[C@@H](C)CCO[P](O)(=O)O[P](O)(O)=O
CACTVS 3.385CC(C)CCC[CH](C)CCC[CH](C)CCO[P](O)(=O)O[P](O)(O)=O
ACDLabs 12.01C(CC(CCCC(C)CCCC(C)C)C)OP(OP(O)(O)=O)(O)=O
FormulaC15 H34 O7 P2
Name(3R,7S)-3,7,11-trimethyldodecyl trihydrogen diphosphate
ChEMBL
DrugBank
ZINCZINC000031977015
PDB chain4yde Chain B Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB4yde CRYSTAL STRUCTURE OF CANDIDA ALBICANS PROTEIN FARNESYLTRANSFERASE BINARY COMPLEX WITH THE ISOPRENOID FARNESYLDIPHOSPHATE
Resolution2.701 Å
Binding residue
(original residue number in PDB)		W196 R311 G370 Y371 C374 R424 Y433 W436
Binding residue
(residue number reindexed from 1)		W70 R185 G234 Y235 C238 R278 Y287 W290
Annotation score1
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Wed Mar 12 20:38:18 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4yde', asym_id = 'B', bs = 'BS02', title = 'CRYSTAL STRUCTURE OF CANDIDA ALBICANS PROTEIN FA...Y COMPLEX WITH THE ISOPRENOID FARNESYLDIPHOSPHATE'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4yde', asym_id='B', bs='BS02', title='CRYSTAL STRUCTURE OF CANDIDA ALBICANS PROTEIN FA...Y COMPLEX WITH THE ISOPRENOID FARNESYLDIPHOSPHATE')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003824,0005965,0008318,0018343', uniprot = '', pdbid = '4yde', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824,0005965,0008318,0018343', uniprot='', pdbid='4yde', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>