Structure of PDB 4x7r Chain B Binding Site BS02

Receptor Information
>4x7r Chain B (length=493) Species: 904724 (Staphylococcus aureus subsp. aureus 21178) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKKIFMMVHELDVNKGGMTSSMFNRSKEFYDADIPADIVTFDYKGNYDEI
IKALKKQGKMDRRTKMYNVFEYFKQISNNKHFKSNKLLYKHISERLKNTI
EIEESKGISRYFDITTRTYIAYIRKSKSEKVIDFFKDNKRIERFSFIDNK
VHMKETFNVDNKVCYQVFYDEKGYPYISRNINANNGAVGKTYVLVNKKEF
KNNLALCVYYLEKLIKDSKDSIMICDGPGSFPKMFNTNHKNAQKYGVIHV
NHHENFDDTGAFKKSEKYIIENANKINGVIVLTEAQRLDILNQFDVENIF
TISNFVKIHNAPKHFQTEKIVGHISRMVPTKRIDLLIEVAELVVKKDNAV
KFHIYGEGSVKDKIAKMIEDKNLERNVFLKGYTTTPQKCLEDFKLVVSTS
QYEGQGLSMIEAMISKRPVVAFDIKYGPSDFIEDNKNGYLIENHNINDMA
DKILQLVNNDVLAAEFGSKARENIIEKYSTESILEKWLNLFNS
Ligand information
Ligand IDSUS
InChIInChI=1S/C6H13NO14S3/c8-4-2(1-19-23(13,14)15)20-6(9)3(7-22(10,11)12)5(4)21-24(16,17)18/h2-9H,1H2,(H,10,11,12)(H,13,14,15)(H,16,17,18)/t2-,3-,4-,5-,6+/m1/s1
InChIKeyVPSCBZXJXYLJOH-UKFBFLRUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6C(C1C(C(C(C(O1)O)NS(=O)(=O)O)OS(=O)(=O)O)O)OS(=O)(=O)O
OpenEye OEToolkits 1.7.6C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)NS(=O)(=O)O)OS(=O)(=O)O)O)OS(=O)(=O)O
ACDLabs 12.01N(C1C(OC(C(C1OS(O)(=O)=O)O)COS(=O)(O)=O)O)S(=O)(O)=O
CACTVS 3.385O[CH]1O[CH](CO[S](O)(=O)=O)[CH](O)[CH](O[S](O)(=O)=O)[CH]1N[S](O)(=O)=O
CACTVS 3.385O[C@H]1O[C@H](CO[S](O)(=O)=O)[C@@H](O)[C@H](O[S](O)(=O)=O)[C@H]1N[S](O)(=O)=O
FormulaC6 H13 N O14 S3
Name2-deoxy-3,6-di-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose;
3,6-di-O-sulfo-N-sulfo-alpha-D-glucosamine;
2-deoxy-3,6-di-O-sulfo-2-(sulfoamino)-alpha-D-glucose;
2-deoxy-3,6-di-O-sulfo-2-(sulfoamino)-D-glucose;
2-deoxy-3,6-di-O-sulfo-2-(sulfoamino)-glucose
ChEMBL
DrugBank
ZINCZINC000098209427
PDB chain4x7r Chain D Residue 3 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4x7r Structure and mechanism of Staphylococcus aureus TarM, the wall teichoic acid alpha-glycosyltransferase.
Resolution2.15 Å
Binding residue
(original residue number in PDB)
H9 G229 S230 K233
Binding residue
(residue number reindexed from 1)
H9 G229 S230 K233
Annotation score1
Enzymatic activity
Enzyme Commision number 2.4.1.70: poly(ribitol-phosphate) alpha-N-acetylglucosaminyltransferase.
Gene Ontology
Molecular Function
GO:0016757 glycosyltransferase activity
GO:0047269 poly(ribitol-phosphate) N-acetylglucosaminyltransferase activity
Biological Process
GO:0019350 teichoic acid biosynthetic process
GO:0071555 cell wall organization
Cellular Component
GO:0005737 cytoplasm

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:4x7r, PDBe:4x7r, PDBj:4x7r
PDBsum4x7r
PubMed25624472
UniProtA0A0H2WWV6|TARM_STAAC Poly(ribitol-phosphate) alpha-N-acetylglucosaminyltransferase (Gene Name=tarM)

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