Structure of PDB 4r60 Chain B Binding Site BS02

Receptor Information

>4r60 Chain B (length=398) Species: 190485 (Xanthomonas campestris pv. campestris str. ATCC 33913)

STQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDAL
LIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQ
LPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGT
AIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQ
LVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLID
TGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACE
AVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPL
QPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA

Ligand information

• Ligand ID: MN
• InChI: InChI=1S/Mn/q+2
• InChIKey: WAEMQWOKJMHJLA-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mn+2]
  CACTVS 3.341: [Mn++]
• Formula: Mn
• Name: MANGANESE (II) ION
• DrugBank: DB06757
• PDB chain: 4r60 Chain B Residue 402

Receptor-Ligand Complex Structure

Structure summary

• PDB: 4r60 Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris
• Resolution: 1.83 Å
• Binding residue (original residue number in PDB): F221 D251 D262 E374
• Binding residue (residue number reindexed from 1): F220 D250 D261 E373
• Annotation score: 1

Enzymatic activity

• Catalytic site (original residue number in PDB): H234 D251 D262 T264 H327 H331 H338 E360 V364 R372 E374
• Catalytic site (residue number reindexed from 1): H233 D250 D261 T263 H326 H330 H337 E359 V363 R371 E373
• Enzyme Commision number: 3.4.13.9: Xaa-Pro dipeptidase.

Gene Ontology

Molecular Function

• GO:0046872 metal ion binding

External links

• PDB: RCSB:4r60, PDBe:4r60, PDBj:4r60
• PDBsum: 4r60
• UniProt: Q8P839