Structure of PDB 4q3d Chain B Binding Site BS02

Receptor Information
>4q3d Chain B (length=258) Species: 269797 (Methanosarcina barkeri str. Fusaro) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ALLTPDDLININMQLQKADSAVQEVTGLDIKGICKALYGTFSSSEKVGIV
PVTSGNGIIGNFSASLHAITQYFGFDSFVTDMPDVSGYYEAVQNGAEIIL
MADDRTFLAHNLKNGKMANNQPCTGIIYAEIASRYLKADSKDVLVVGLGK
VGFPGAEHLVQKDFRVYGYDADETLLERATSNLGIIPFDPANPKKFSIIF
EATPCANTIPEAVLSENCVLSTPGIPCAISEELRDKYEVQLIAEPLGIGT
ASMLYSVL
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain4q3d Chain B Residue 903 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4q3d The Formation of Pyrroline and Tetrahydropyridine Rings in Amino Acids Catalyzed by Pyrrolysine Synthase (PylD).
Resolution2.2 Å
Binding residue
(original residue number in PDB)		Y129 E245 L247 I249
Binding residue
(residue number reindexed from 1)		Y128 E244 L246 I248
Annotation score1
Enzymatic activity
Enzyme Commision number 1.4.1.-
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
Biological Process
GO:0008652 amino acid biosynthetic process

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Molecular Function
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Biological Process
External links
PDB RCSB:4q3d, PDBe:4q3d, PDBj:4q3d
PDBsum4q3d
PubMed24916332
UniProtQ46E80|PYLD_METBF Pyrrolysine synthase (Gene Name=pylD)

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