Structure of PDB 4omy Chain B Binding Site BS02
Receptor Information
>4omy Chain B (length=97) Species:
380
(Sinorhizobium fredii) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
QPLSPEKHEEAEIAAGFLSAMANPKRLLILDSLVKEEMAVGALANKVGLS
QSALSQHLSKLRAQNLVSTRRDAQTIYYSSSSDSVMKILGALSEIYG
Ligand information
>4omy Chain F (length=21) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
ttaacttcagggttctctaat
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
4omy
Structural basis for regulation of rhizobial nodulation and symbiosis gene expression by the regulatory protein NolR.
Resolution
3.062 Å
Binding residue
(original residue number in PDB)
A44 V45 G46 Q56 S57 S60 T80 I81 Y83
Binding residue
(residue number reindexed from 1)
A39 V40 G41 Q51 S52 S55 T75 I76 Y78
Binding affinity
PDBbind-CN
: Kd=0.43uM
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003700
DNA-binding transcription factor activity
Biological Process
GO:0006355
regulation of DNA-templated transcription
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:4omy
,
PDBe:4omy
,
PDBj:4omy
PDBsum
4omy
PubMed
24733893
UniProt
Q83TD2
[
Back to BioLiP
]