Structure of PDB 4ojz Chain B Binding Site BS02

Receptor Information
>4ojz Chain B (length=705) Species: 203122 (Saccharophagus degradans 2-40) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HPNLIVTEQDVANIAASWESYDAYAEQLNADKTNLDAFMAEGVVVPMPKD
AGGGYTHEQHKRNYKAIRNAGFLYQVTGDEKYLTFAKDLLLAYAKMYPSL
GEHPNRKEQSPGRLFWQSLNEAVWLVYSIQGYDAIIDGLAAEEKQEIESG
VFLPMAKFLSVESPETFNKIHNHGTWAVAAVGMTGYVLGNDELVEISLMG
LDKTGKAGFMKQLDKLFSPDGYYTEGPYAQRYALMPFIWFAKAIETNEPE
RKIFEYRNNILLKAVYTTIDLSYAGYFFPINDALKDKGIDTVELVHALAI
VYSITGDNTLLDIAQEQGRISLTGDGLKVAKAVGEGLTQPYNYRSILLGD
GADGDQGALSIHRLGEGHNHMALVAKNTSQGMGHGHFDKLNWLLYDNGNE
IVTDYGAARYLNVEAKYGGHYLAENNTWAKQTIAHNTLVVNEQSHFYGDV
TTADLHHPEVLSFYSGEDYQLSSAKEANAYDGVEFVRSMLLVNVPSLEHP
IVVDVLNVSADKASTFDLPLYFNGQIIDFSFKVKDNKNVMKMLGKRNGYQ
HLWLRNTAPVGDASERATWILDDRFYSYAFVTSTPSKKQNVLIAELGAND
PNYNLRQQQVLIRRVEKAKQASFVSVLEPHGKYDGSLETTSGAYSNVKSV
KHVSENGKDVVVVDLKDGSNVVVALSYNANSEQVHKVNAGEEAIEWKGFS
SVVVR
Ligand information
Ligand IDMAV
InChIInChI=1S/C6H10O7/c7-1-2(8)4(5(10)11)13-6(12)3(1)9/h1-4,6-9,12H,(H,10,11)/t1-,2-,3-,4-,6-/m0/s1
InChIKeyAEMOLEFTQBMNLQ-BYHBOUFCSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0[C@@H]1([C@@H]([C@H](O[C@@H]([C@H]1O)O)C(=O)O)O)O
OpenEye OEToolkits 1.7.0C1(C(C(OC(C1O)O)C(=O)O)O)O
CACTVS 3.370O[CH]1O[CH]([CH](O)[CH](O)[CH]1O)C(O)=O
CACTVS 3.370O[C@H]1O[C@@H]([C@@H](O)[C@H](O)[C@@H]1O)C(O)=O
ACDLabs 12.01O=C(O)C1OC(O)C(O)C(O)C1O
FormulaC6 H10 O7
Namealpha-D-mannopyranuronic acid;
alpha-D-mannuronic acid;
D-mannuronic acid;
mannuronic acid
ChEMBL
DrugBankDB01982
ZINC
PDB chain4ojz Chain D Residue 2 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4ojz Structure of a PL17 Family Alginate Lyase Demonstrates Functional Similarities among Exotype Depolymerases.
Resolution1.9 Å
Binding residue
(original residue number in PDB)		Q146 H202 R438
Binding residue
(residue number reindexed from 1)		Q117 H173 R409
Annotation score1
Enzymatic activity
Enzyme Commision number 4.2.2.26: oligo-alginate lyase.
Gene Ontology
Cellular Component
GO:0042597 periplasmic space

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Molecular Function
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Cellular Component
External links
PDB RCSB:4ojz, PDBe:4ojz, PDBj:4ojz
PDBsum4ojz
PubMed24478312
UniProtQ21FJ0|EALGL_SACD2 Exo-oligoalginate lyase (Gene Name=alg17C)

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