Structure of PDB 4gwm Chain B Binding Site BS02

Receptor Information
>4gwm Chain B (length=554) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PWENFDVDGGMDQDIFDINEGLGLDLFEGDIRLDRAQIRNSIIGEKYRWP
HTIPYVLEDSLEMNAKGVILNAFERYRLKTCIDFKPWAGETNYISVFKGS
GCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDY
VRIMWDRILSGREHNFNTLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISD
FEDVIGQRMDFSDSDLLKLNQLYNCSSSLSFMDSCSFELENVCGMIQNAD
WQRVSQVPRGPESDHSNGSGFFMHFDSSSVNVGATAVLESRTLYPKRGFQ
CLQFYLYNSGSESDQLNIYIREYSADNVDGNLTLVEEIKEIPTGSWQLYH
VTLKVTKKFRVVFEGRKGSGASLGGLSIDDINLSETRCPHHIWHIRNFTQ
FIGSPNGTLYSPPFYSSKGYAFQIYLNLAHVTNAGIYFHLISGANDDQLQ
WPCPWQQATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKV
GTVALFSNGTQFRRGGGYGTSAFITHERLKSRDFIKGDDVYILLTVEDIS
HLNS
Ligand information
Ligand IDMAN
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-PQMKYFCFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O)O)O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-mannopyranose;
alpha-D-mannose;
D-mannose;
mannose
ChEMBLCHEMBL365590
DrugBank
ZINCZINC000003860903
PDB chain4gwm Chain K Residue 7 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4gwm Structural basis for the sheddase function of human meprin beta metalloproteinase at the plasma membrane
Resolution1.85 Å
Binding residue
(original residue number in PDB)		S456 K457
Binding residue
(residue number reindexed from 1)		S417 K418
Annotation score4
Enzymatic activity
Catalytic site (original residue number in PDB) H152 E153 H156 H162 Y211
Catalytic site (residue number reindexed from 1) H130 E131 H134 H140 Y181
Enzyme Commision number 3.4.24.63: meprin B.
Gene Ontology
Molecular Function
GO:0004222 metalloendopeptidase activity
GO:0008237 metallopeptidase activity
GO:0008270 zinc ion binding
Biological Process
GO:0006508 proteolysis
Cellular Component
GO:0016020 membrane

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Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4gwm, PDBe:4gwm, PDBj:4gwm
PDBsum4gwm
PubMed22988105
UniProtQ16820|MEP1B_HUMAN Meprin A subunit beta (Gene Name=MEP1B)

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