Structure of PDB 4d05 Chain B Binding Site BS02

Receptor Information
>4d05 Chain B (length=249) Species: 1365007 (Psychromonas sp. SP041) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IQLATNYRQDIDVTQYYVSEKLDGIRAYWNGHQLISKQGNIFTAPTWFIA
SFPTTAMDGELWIARQQFETVSGIARTQDNQNEQWKQIKFMIFDLPKSTV
SFEQRINKMQTLVTDTNSPYLQMIEQQKIPNTVALFDLLNKVVMGKGEGL
MLHHQDALYQTSRDLMKLKKFEDAEATVIAYLPGKGKYEGLLGAILVKNE
EGVTFKIGSGFSDEERSTPPPIGSLITYRFTGKTNNNIPRFASFVRIRV
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain4d05 Chain B Residue 1261 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4d05 Enzyme-Adenylate Structure of a Bacterial ATP-Dependent DNA Ligase with a Minimized DNA-Binding Surface
Resolution1.65 Å
Binding residue
(original residue number in PDB)		F97 F106 H157
Binding residue
(residue number reindexed from 1)		F93 F102 H153
Annotation score4
Enzymatic activity
Enzyme Commision number 6.5.1.1: DNA ligase (ATP).
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003910 DNA ligase (ATP) activity
GO:0005524 ATP binding
Biological Process
GO:0006260 DNA replication
GO:0006281 DNA repair
GO:0006310 DNA recombination

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Molecular Function
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Biological Process
External links
PDB RCSB:4d05, PDBe:4d05, PDBj:4d05
PDBsum4d05
PubMed25372693
UniProtA0A0A6YVN6

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