Structure of PDB 3uvf Chain B Binding Site BS02

Receptor Information

>3uvf Chain B (length=255) Species: 51453 (Trichoderma reesei)

SHMDLTYAYLVGLFEGDGYFSITKKGKYLTYELGIELSIKDVQLIYKIKD
ILGVGKVSFRKRNEIEMVSLRIRDKNHLKNFILPIFDKYPMLSNKQYDYL
RFKDALLSNIIYSDDLPEYARSNESINSVDSIINTSYFSAWLVGFIEAEG
CFSTYKLNKDDDYLIASFDIAQKDGDILISAIHKYLSFTTKIYLDKTNCS
RLKVTGVRSVKNVVKFIQGAPVKLLGNKKLQYKLWIKQLRKISRYSEKIQ
LPSNY

Ligand information

>3uvf Chain F (length=28)

cgcttaacagagaaacctcctcagcgct

Receptor-Ligand Complex Structure

Structure summary

• PDB: 3uvf Expanding LAGLIDADG endonuclease scaffold diversity by rapidly surveying evolutionary sequence space.
• Resolution: 3.0 Å
• Binding residue (original residue number in PDB): D18 Y20 S22 T24 K25 K26 E33 E37 S39 I66 M68 Y164 T191 K192 Y194 R202 K204 T206 G207 V208 R245
• Binding residue (residue number reindexed from 1): D17 Y19 S21 T23 K24 K25 E32 E36 S38 I65 M67 Y163 T190 K191 Y193 R201 K203 T205 G206 V207 R244

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Thu Apr 10 06:34:31 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '3uvf', asym_id = 'B', bs = 'BS02', title = 'Expanding LAGLIDADG endonuclease scaffold divers...by rapidly surveying evolutionary sequence space.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='3uvf', asym_id='B', bs='BS02', title='Expanding LAGLIDADG endonuclease scaffold divers...by rapidly surveying evolutionary sequence space.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0004519', uniprot = '', pdbid = '3uvf', asym_id = 'B'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004519', uniprot='', pdbid='3uvf', asym_id='B')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>