Structure of PDB 3rfv Chain B Binding Site BS02

Receptor Information
>3rfv Chain B (length=265) Species: 176299 (Agrobacterium fabrum str. C58) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCD
LADANAVNAMVAGCDGIVHLGGISVEKPFEQILQGNIIGLYNLYEAARAH
GQPRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYF
DKFGQETALVRIGSCTPEPNNYRMLSTWFSHDDFVSLIEAVFRAPVLGCP
VVWGASANDAGWWDNSHLGFLGWKPKDNAEAFRRHITETTPPPDPNDALV
RFQGGTFVDNPIFKQ
Ligand information
Ligand ID15L
InChIInChI=1S/C6H8O7/c7-1-2(8)4(5(10)11)13-6(12)3(1)9/h1-4,7-9H,(H,10,11)/t1-,2+,3+,4-/m0/s1
InChIKeyYLKFQNUGXOLRNI-KXMYSMCESA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0[C@@H]1([C@H]([C@H](OC(=O)[C@@H]1O)C(=O)O)O)O
CACTVS 3.370O[C@H]1[C@@H](O)[C@H](OC(=O)[C@@H]1O)C(O)=O
OpenEye OEToolkits 1.7.0C1(C(C(OC(=O)C1O)C(=O)O)O)O
CACTVS 3.370O[CH]1[CH](O)[CH](OC(=O)[CH]1O)C(O)=O
ACDLabs 12.01O=C(O)C1OC(=O)C(O)C(O)C1O
FormulaC6 H8 O7
NameD-galactaro-1,5-lactone;
galactaro-1,5-lactone;
(2S,3R,4S,5R,6S)-3,4,5-trihydroxy-6-oxidotetrahydro-2H-pyran-2-carboxylate
ChEMBL
DrugBank
ZINC
PDB chain3rfv Chain B Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3rfv Crystal Structure of Uronate Dehydrogenase from Agrobacterium tumefaciens.
Resolution2.1 Å
Binding residue
(original residue number in PDB)
S75 S111 H113 Y136 S165 R174 F258
Binding residue
(residue number reindexed from 1)
S74 S110 H112 Y135 S164 R173 F257
Annotation score5
Enzymatic activity
Enzyme Commision number 1.1.1.203: uronate dehydrogenase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016491 oxidoreductase activity
GO:0050388 uronate dehydrogenase activity

View graph for
Molecular Function
External links
PDB RCSB:3rfv, PDBe:3rfv, PDBj:3rfv
PDBsum3rfv
PubMed21676870
UniProtQ7CRQ0|URODH_AGRFC Uronate dehydrogenase (Gene Name=udh)

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