Structure of PDB 3ojf Chain B Binding Site BS02
Receptor Information
>3ojf Chain B (length=256) Species:
226900
(Bacillus cereus ATCC 14579) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
ELLQGKTFVVMGVANQRSIAWGIARSLHNAGAKLIFTYAGERLERNVREL
ADTLEGQESLVLPCDVTNDEELTACFETIKQEVGTIHGVAHCIAFANRDD
LKGEFVDTSRDGFLLAQNISAFSLTAVAREAKKVMTEGGNILTLTYLGGE
RVVKNYNVMGVAKASLEASVKYLANDLGQHGIRVNAISAGPIRTLSAKGV
GDFNSILREIEERAPLRRTTTQEEVGDTAVFLFSDLARGVTGENIHVDSG
YHILGL
Ligand information
Ligand ID
NDP
InChI
InChI=1S/C21H30N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1,3-4,7-8,10-11,13-16,20-21,29-31H,2,5-6H2,(H2,23,32)(H,36,37)(H,38,39)(H2,22,24,25)(H2,33,34,35)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
InChIKey
ACFIXJIJDZMPPO-NNYOXOHSSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5C=CCC(=C5)C(=O)N)O)O)O)OP(=O)(O)O)N
CACTVS 3.341
NC(=O)C1=CN(C=CC1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
CACTVS 3.341
NC(=O)C1=CN(C=CC1)[C@@H]2O[C@H](CO[P@@](O)(=O)O[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5C=CCC(=C5)C(=O)N)O)O)O)OP(=O)(O)O)N
Formula
C21 H30 N7 O17 P3
Name
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
ChEMBL
CHEMBL407009
DrugBank
DB02338
ZINC
ZINC000008215411
PDB chain
3ojf Chain B Residue 503 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
3ojf
Dimeric and tetrameric forms of enoyl-acyl carrier protein reductase from Bacillus cereus
Resolution
2.2 Å
Binding residue
(original residue number in PDB)
G13 S19 I20 L44 D66 V67 C93 I94 A95 I120 L145 T146 Y147 K164 A190 P192 I193 T195 S197
Binding residue
(residue number reindexed from 1)
G12 S18 I19 L43 D65 V66 C92 I93 A94 I119 L144 T145 Y146 K163 A189 P191 I192 T194 S196
Annotation score
3
Enzymatic activity
Catalytic site (original residue number in PDB)
S19 Y147 Y157 M160 K164 K199
Catalytic site (residue number reindexed from 1)
S18 Y146 Y156 M159 K163 K198
Enzyme Commision number
1.3.1.9
: enoyl-[acyl-carrier-protein] reductase (NADH).
Gene Ontology
Molecular Function
GO:0000166
nucleotide binding
GO:0004318
enoyl-[acyl-carrier-protein] reductase (NADH) activity
GO:0016491
oxidoreductase activity
GO:0036094
small molecule binding
GO:0042802
identical protein binding
GO:0070401
NADP+ binding
GO:0141148
enoyl-[acyl-carrier-protein] reductase (NADPH) activity
Biological Process
GO:0006633
fatty acid biosynthetic process
GO:0030497
fatty acid elongation
Cellular Component
GO:1902494
catalytic complex
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:3ojf
,
PDBe:3ojf
,
PDBj:3ojf
PDBsum
3ojf
PubMed
20800575
UniProt
Q81GI3
|FABI_BACCR Enoyl-[acyl-carrier-protein] reductase [NADH] FabI (Gene Name=fabI)
[
Back to BioLiP
]