Structure of PDB 3nw8 Chain B Binding Site BS02

Receptor Information
>3nw8 Chain B (length=606) Species: 10306 (Human alphaherpesvirus 1 strain KOS) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKE
NIAPYKFKATMYYKDVTVSQVWFGHRSSQFMGIFEDRAPVPFEEVIDKIN
AKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDL
KYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYG
YREGSHTEHTSYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTV
AWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEY
PLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYLANGGFLIAY
QPLLSNTLAELYVREHLREQSRKVERIKTTSSIEFARLQFTYNHIQRHVN
DMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVM
AVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLG
ENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVS
TFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFAD
IDTVIH
Ligand information
Ligand IDMRY
InChIInChI=1S/C4H10O4/c5-1-3(7)4(8)2-6/h3-8H,1-2H2/t3-,4+
InChIKeyUNXHWFMMPAWVPI-ZXZARUISSA-N
SMILES
SoftwareSMILES
CACTVS 3.341OC[CH](O)[CH](O)CO
OpenEye OEToolkits 1.5.0C(C(C(CO)O)O)O
ACDLabs 10.04OCC(O)C(O)CO
OpenEye OEToolkits 1.5.0C([C@H]([C@H](CO)O)O)O
CACTVS 3.341OC[C@@H](O)[C@@H](O)CO
FormulaC4 H10 O4
NameMESO-ERYTHRITOL
ChEMBLCHEMBL349605
DrugBankDB04481
ZINCZINC000017971067
PDB chain3nw8 Chain B Residue 2001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3nw8 Structural basis of local, pH-dependent conformational changes in glycoprotein B from herpes simplex virus type 1.
Resolution2.75915 Å
Binding residue
(original residue number in PDB)		N153 S362 V363
Binding residue
(residue number reindexed from 1)		N51 S260 V261
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:3nw8, PDBe:3nw8, PDBj:3nw8
PDBsum3nw8
PubMed20943984
UniProtP06437|GB_HHV1K Envelope glycoprotein B (Gene Name=gB)

[Back to BioLiP]