Structure of PDB 3mm5 Chain B Binding Site BS02
Receptor Information
>3mm5 Chain B (length=363) Species:
2234
(Archaeoglobus fulgidus) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
EGVKTDFGPPYFRDLLHPVIAKNYGKWKYHEVVKPGVIKRVAESGDVIYV
VRFGTPRLLSIYTVRELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDL
INEVQERVGFPCGGTWDAVKGEYGLSNIVHTQGWIHCHTPAIDASGIVKA
VMDELYEYFTDHKLPAMCRISLACCANMCGAVHASDIAIVGIHRTPPIPN
DEAIRKTCEIPSTVAACPTGALKPDMKNKTIKVDVEKCMYCGNCYTMCPG
MPLFDPENDGAAIMVGGKLSEARRMPELSKVVVPWVPNEPPRWPTLVKYV
KQILEAWAANANKHERLIEWVDRIGWERFFELTGLEFTQHLIDDYRITPY
FYSEFRASTQFKW
Ligand information
Ligand ID
SF4
InChI
InChI=1S/4Fe.4S
InChIKey
LJBDFODJNLIPKO-UHFFFAOYSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 2.0.7
[S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
CACTVS 3.385
S1[Fe]S[Fe]1.S2[Fe]S[Fe]2
Formula
Fe4 S4
Name
IRON/SULFUR CLUSTER
ChEMBL
DrugBank
ZINC
PDB chain
3mm5 Chain B Residue 585 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
3mm5
Reaction cycle of the dissimilatory sulfite reductase from Archaeoglobus fulgidus.
Resolution
1.8 Å
Binding residue
(original residue number in PDB)
T134 Q135 C140 T142 P143 C177 C178 N180 M181 C182
Binding residue
(residue number reindexed from 1)
T131 Q132 C137 T139 P140 C174 C175 N177 M178 C179
Annotation score
1
Enzymatic activity
Enzyme Commision number
1.8.1.22
: dissimilatory sulfite reductase.
Gene Ontology
Molecular Function
GO:0009055
electron transfer activity
GO:0016002
sulfite reductase activity
GO:0016491
oxidoreductase activity
GO:0018551
dissimilatory sulfite reductase activity
GO:0020037
heme binding
GO:0046872
metal ion binding
GO:0050311
sulfite reductase (ferredoxin) activity
GO:0051536
iron-sulfur cluster binding
GO:0051539
4 iron, 4 sulfur cluster binding
Biological Process
GO:0000103
sulfate assimilation
GO:0006790
sulfur compound metabolic process
Cellular Component
GO:0009337
sulfite reductase complex (NADPH)
GO:0016020
membrane
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:3mm5
,
PDBe:3mm5
,
PDBj:3mm5
PDBsum
3mm5
PubMed
20822098
UniProt
Q59110
|DSRB_ARCFU Sulfite reductase, dissimilatory-type subunit beta (Gene Name=dsrB)
[
Back to BioLiP
]