Structure of PDB 3kaa Chain B Binding Site BS02

Receptor Information
>3kaa Chain B (length=109) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DGYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDER
NVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKK
LELKLDIKA
Ligand information
Ligand IDPSF
InChIInChI=1S/C18H34NO10P/c1-3-5-7-9-16(20)26-11-14(29-17(21)10-8-6-4-2)12-27-30(24,25)28-13-15(19)18(22)23/h14-15H,3-13,19H2,1-2H3,(H,22,23)(H,24,25)/t14-,15+/m1/s1
InChIKeyMIQYPPGTNIFAPO-CABCVRRESA-N
SMILES
SoftwareSMILES
CACTVS 3.341CCCCCC(=O)OC[C@H](CO[P@](O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCCCC
OpenEye OEToolkits 1.5.0CCCCCC(=O)OCC(COP(=O)(O)OCC(C(=O)O)N)OC(=O)CCCCC
CACTVS 3.341CCCCCC(=O)OC[CH](CO[P](O)(=O)OC[CH](N)C(O)=O)OC(=O)CCCCC
OpenEye OEToolkits 1.5.0CCCCCC(=O)OCC(CO[P@@](=O)(O)OC[C@@H](C(=O)O)N)OC(=O)CCCCC
ACDLabs 10.04O=C(OC(COP(=O)(OCC(C(=O)O)N)O)COC(=O)CCCCC)CCCCC
FormulaC18 H34 N O10 P
Name1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE;
PHOSPHATIDYLSERINE
ChEMBL
DrugBank
ZINC
PDB chain3kaa Chain B Residue 120 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3kaa T cell/transmembrane, Ig, and mucin-3 allelic variants differentially recognize phosphatidylserine and mediate phagocytosis of apoptotic cells.
Resolution3.002 Å
Binding residue
(original residue number in PDB)
W41 S42 R93 Q95 L99 M100 D102
Binding residue
(residue number reindexed from 1)
W37 S38 R89 Q91 L95 M96 D98
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:3kaa, PDBe:3kaa, PDBj:3kaa
PDBsum3kaa
PubMed20083673
UniProtQ8VIM0|HAVR2_MOUSE Hepatitis A virus cellular receptor 2 homolog (Gene Name=Havcr2)

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