Structure of PDB 3i5u Chain B Binding Site BS02

Receptor Information
>3i5u Chain B (length=325) Species: 167636 (Streptomyces carzinostaticus subsp. neocarzinostaticus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AAHIGLRALADLATPMAVRVAATLRVADHIAAGHRTAAEIASAAGAHADS
LDRLLRHLVAVGLFTRDGQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVG
RGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHL
ELDYTGIAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGP
ASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAV
AILRRCAEAAGSGGVVLVIEAVAGAGTGMDLRMLTYFGGKERSLAELGEL
AAQAGLAVRAAHPISYVSIVEMTAL
Ligand information
Ligand ID5NA
InChIInChI=1S/C12H10O3/c1-7-3-2-4-9-8(7)5-6-10(13)11(9)12(14)15/h2-6,13H,1H3,(H,14,15)
InChIKeyKKMAZNUSFFWQQY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0Cc1cccc2c1ccc(c2C(=O)O)O
ACDLabs 11.02O=C(O)c1c2c(ccc1O)c(ccc2)C
CACTVS 3.352Cc1cccc2c1ccc(O)c2C(O)=O
FormulaC12 H10 O3
Name2-hydroxy-5-methyl naphthoic acid;
2-hydroxy-5-methylnaphthalene-1-carboxylic acid
ChEMBL
DrugBank
ZINC
PDB chain3i5u Chain B Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3i5u Molecular basis of substrate promiscuity for the SAM-dependent O-methyltransferase NcsB1, involved in the biosynthesis of the enediyne antitumor antibiotic neocarzinostatin.
Resolution2.6 Å
Binding residue
(original residue number in PDB)		W96 F146 M150 M286 R289 Y293
Binding residue
(residue number reindexed from 1)		W92 F142 M146 M279 R282 Y286
Annotation score3
Enzymatic activity
Catalytic site (original residue number in PDB) H246 D247 E274 E298
Catalytic site (residue number reindexed from 1) H242 D243 E270 E291
Enzyme Commision number 2.1.1.303: 2,7-dihydroxy-5-methyl-1-naphthoate 7-O-methyltransferase.
Gene Ontology
Molecular Function
GO:0008168 methyltransferase activity
GO:0008171 O-methyltransferase activity
Biological Process
GO:0017000 antibiotic biosynthetic process
GO:0032259 methylation

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:3i5u, PDBe:3i5u, PDBj:3i5u
PDBsum3i5u
PubMed19702337
UniProtQ84HC8|NCSB1_STRCZ 2,7-dihydroxy-5-methyl-1-naphthoate 7-O-methyltransferase (Gene Name=ncsB1)

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