Structure of PDB 3gup Chain B Binding Site BS02

Receptor Information
>3gup Chain B (length=162) Species: 10665 (Tequatrovirus T4) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MNIFEMLRIDEGLRLKIYKDCEGYYTIGIGHLLTKSPDLNAAKSELDKAI
GRNCNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCAAI
NEVFQMGVTGVAGFTNVLRMLQQKRWDEAAVNLAKSRWYNQCPDRAKRVI
TTFRTGTWDAYK
Ligand information
Ligand ID0PY
InChIInChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H
InChIKeyJUJWROOIHBZHMG-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04n1ccccc1
CACTVS 3.341
OpenEye OEToolkits 1.5.0		c1ccncc1
FormulaC5 H5 N
Namepyridine;
Azabenzene;
Azine
ChEMBLCHEMBL266158
DrugBank
ZINCZINC000000895354
PDB chain3gup Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3gup Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme.
Resolution1.5 Å
Binding residue
(original residue number in PDB)		V87 A99
Binding residue
(residue number reindexed from 1)		V87 A99
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) E11 D20
Catalytic site (residue number reindexed from 1) E11 D20
Enzyme Commision number 3.2.1.17: lysozyme.
Gene Ontology
Molecular Function
GO:0003796 lysozyme activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
Biological Process
GO:0009253 peptidoglycan catabolic process
GO:0016998 cell wall macromolecule catabolic process
GO:0031640 killing of cells of another organism
GO:0042742 defense response to bacterium
GO:0044659 viral release from host cell by cytolysis
Cellular Component
GO:0030430 host cell cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3gup, PDBe:3gup, PDBj:3gup
PDBsum3gup
PubMed19663503
UniProtP00720|ENLYS_BPT4 Endolysin (Gene Name=E)

[Back to BioLiP]