Structure of PDB 3coq Chain B Binding Site BS02
Receptor Information
>3coq Chain B (length=89) Species:
4932
(Saccharomyces cerevisiae) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
EQACDICRLKKLKCSKEKPKCAKCLKNNWECRYSPKTKRSPLTRAHLTEV
ESRLERLEQLFLLIFPREDLDMILKMDSLQDIKALLTGL
Ligand information
>3coq Chain E (length=20) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
tccggaggactgtcctccgg
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
3coq
Structural basis for dimerization in DNA recognition by gal4.
Resolution
2.4 Å
Binding residue
(original residue number in PDB)
K17 K18 L49 T50 R51
Binding residue
(residue number reindexed from 1)
K10 K11 L42 T43 R44
Binding affinity
PDBbind-CN
: Kd=24.6nM
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0000981
DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003700
DNA-binding transcription factor activity
GO:0008270
zinc ion binding
Biological Process
GO:0006355
regulation of DNA-templated transcription
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:3coq
,
PDBe:3coq
,
PDBj:3coq
PDBsum
3coq
PubMed
18611375
UniProt
P04386
|GAL4_YEAST Regulatory protein GAL4 (Gene Name=GAL4)
[
Back to BioLiP
]