Structure of PDB 3cld Chain B Binding Site BS02

Receptor Information
>3cld Chain B (length=241) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LTPTLVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKW
AKAIPGFRNLHLDDQMTLLQYSWMYLMAFALGWRSYRQNLLCFAPDLIIN
EQRMTLPGMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGL
KSQELFDEIRMTYIKELGKAIVKRQNWQRFYQLTKLLDSMHEVVENLLNY
CFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQ
Ligand information
Ligand IDGW6
InChIInChI=1S/C27H29F3O6S/c1-14-9-16-17-11-19(29)18-10-15(31)6-7-24(18,2)26(17,30)21(32)12-25(16,3)27(14,23(34)37-13-28)36-22(33)20-5-4-8-35-20/h4-8,10,14,16-17,19,21,32H,9,11-13H2,1-3H3/t14-,16+,17+,19+,21+,24+,25+,26+,27+/m1/s1
InChIKeyXTULMSXFIHGYFS-VLSRWLAYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C(SCF)C5(OC(=O)c1occc1)C4(C)CC(O)C3(F)C2(C=CC(=O)C=C2C(F)CC3C4CC5C)C
CACTVS 3.341C[CH]1C[CH]2[CH]3C[CH](F)C4=CC(=O)C=C[C]4(C)[C]3(F)[CH](O)C[C]2(C)[C]1(OC(=O)c5occc5)C(=O)SCF
OpenEye OEToolkits 1.5.0C[C@@H]1C[C@H]2[C@@H]3C[C@@H](C4=CC(=O)C=C[C@@]4([C@]3([C@H](C[C@@]2([C@]1(C(=O)SCF)OC(=O)c5ccco5)C)O)F)C)F
OpenEye OEToolkits 1.5.0CC1CC2C3CC(C4=CC(=O)C=CC4(C3(C(CC2(C1(C(=O)SCF)OC(=O)c5ccco5)C)O)F)C)F
CACTVS 3.341C[C@@H]1C[C@H]2[C@@H]3C[C@H](F)C4=CC(=O)C=C[C@]4(C)[C@@]3(F)[C@@H](O)C[C@]2(C)[C@@]1(OC(=O)c5occc5)C(=O)SCF
FormulaC27 H29 F3 O6 S
Name(6alpha,11alpha,14beta,16alpha,17alpha)-6,9-difluoro-17-{[(fluoromethyl)sulfanyl]carbonyl}-11-hydroxy-16-methyl-3-oxoan drosta-1,4-dien-17-yl furan-2-carboxylate;
Fluticasone furoate
ChEMBLCHEMBL1676
DrugBankDB08906
ZINCZINC000003992105
PDB chain3cld Chain B Residue 2 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3cld X-ray crystal structure of the novel enhanced-affinity glucocorticoid agonist fluticasone furoate in the glucocorticoid receptor-ligand binding domain.
Resolution2.84 Å
Binding residue
(original residue number in PDB)
M560 L563 N564 G567 Q570 M601 M604 A605 F623 M639 C643 L732 Y735 C736 T739
Binding residue
(residue number reindexed from 1)
M33 L36 N37 G40 Q43 M74 M77 A78 F93 M109 C113 L197 Y200 C201 T204
Annotation score1
Binding affinityBindingDB: Ki=0.510000nM,IC50=0.0398nM,EC50=0.400000nM
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:3cld, PDBe:3cld, PDBj:3cld
PDBsum3cld
PubMed18522385
UniProtP04150|GCR_HUMAN Glucocorticoid receptor (Gene Name=NR3C1)

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