Structure of PDB 2y1x Chain B Binding Site BS02

Receptor Information
>2y1x Chain B (length=342) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFK
DKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDR
IVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGN
MFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEY
FRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLV
HGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTL
SGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRY
Ligand information
Ligand ID845
InChIInChI=1S/C24H22F3N7O2/c1-13(28)21(35)30-12-14-4-2-5-15(10-14)34-19(11-20(33-34)24(25,26)27)23-32-31-22(36-23)17-6-3-7-18-16(17)8-9-29-18/h2-11,13,29,32-33H,12,28H2,1H3,(H,30,35)/b23-19-/t13-/m0/s1
InChIKeyAIYASLHMGKXCHQ-NTBIESDESA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.6.1C[C@@H](C(=O)NCc1cccc(c1)N2C(=C3NN=C(O3)c4cccc5c4cc[nH]5)C=C(N2)C(F)(F)F)N
CACTVS 3.352C[C@H](N)C(=O)NCc1cccc(c1)N\2NC(=CC\2=C3\NN=C(O3)c4cccc5[nH]ccc45)C(F)(F)F
OpenEye OEToolkits 1.6.1CC(C(=O)NCc1cccc(c1)N2C(=C3NN=C(O3)c4cccc5c4cc[nH]5)C=C(N2)C(F)(F)F)N
CACTVS 3.352C[CH](N)C(=O)NCc1cccc(c1)N2NC(=CC2=C3NN=C(O3)c4cccc5[nH]ccc45)C(F)(F)F
FormulaC24 H22 F3 N7 O2
NameN-(3-{5-[5-(1H-INDOL-4-YL)-1,3,4-OXADIAZOL-2-YL]-3-(TRIFLUOROMETHYL)-1H-PYRAZOL-1-YL}BENZYL)-L-ALANINAMIDE
ChEMBL
DrugBank
ZINCZINC000098208589
PDB chain2y1x Chain B Residue 1002 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2y1x Structural Basis for Carm1 Inhibition by Indole and Pyrazole Inhibitors
Resolution2.4 Å
Binding residue
(original residue number in PDB)		F153 Y154 N162 M163 E258 P259 M260 Y262 E267 H415 W416 F475
Binding residue
(residue number reindexed from 1)		F18 Y19 N27 M28 E123 P124 M125 Y127 E132 H280 W281 F340
Annotation score1
Binding affinityPDBbind-CN: -logKd/Ki=7.57,IC50=0.027uM
Enzymatic activity
Catalytic site (original residue number in PDB) D166 E258 E267 H415
Catalytic site (residue number reindexed from 1) D31 E123 E132 H280
Enzyme Commision number 2.1.1.319: type I protein arginine methyltransferase.
Gene Ontology
Molecular Function
GO:0016274 protein-arginine N-methyltransferase activity
Biological Process
GO:0018216 peptidyl-arginine methylation

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Molecular Function
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Biological Process
External links
PDB RCSB:2y1x, PDBe:2y1x, PDBj:2y1x
PDBsum2y1x
PubMed21410432
UniProtQ86X55|CARM1_HUMAN Histone-arginine methyltransferase CARM1 (Gene Name=CARM1)

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