Structure of PDB 2x3l Chain B Binding Site BS02

Receptor Information
>2x3l Chain B (length=423) Species: 1280 (Staphylococcus aureus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PILNKLESLNQEEAISLHVPGHKNMTIGHLSQLSMTMDKTEIPGLDDLHH
PEEVILKSMKQVEKHSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARN
VHKSVLHALDISQQEGHFIETHQSPLTNHYNKVNLHKLVVLTYPNYYGET
FNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHK
TLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFY
KTYDSTLFFAKRAQLIECLENKGFEMLQVDDPLKLLIKYEGFTGHDIQNW
FMNAHIYLELADDYQALAILPLWHHDDTYLFDSLLRKIEDMILPKKSVQL
LTTEGNYKPKYVTWCDLKKAKGKVLARHIVPYPPGIPIIFKGETITENMI
ELVNEYLETGMIVEGIKNNKILV
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain2x3l Chain B Residue 1211 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2x3l The Scottish Structural Proteomics Facility: Targets, Methods and Outputs.
Resolution2.0 Å
Binding residue
(original residue number in PDB)		G80 T81 T82 H106 D181 A183 H184 S208 K211
Binding residue
(residue number reindexed from 1)		G76 T77 T78 H102 D170 A172 H173 S197 K200
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 30 20:41:25 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '2x3l', asym_id = 'B', bs = 'BS02', title = 'The Scottish Structural Proteomics Facility: Targets, Methods and Outputs.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='2x3l', asym_id='B', bs='BS02', title='The Scottish Structural Proteomics Facility: Targets, Methods and Outputs.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003824', uniprot = '', pdbid = '2x3l', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824', uniprot='', pdbid='2x3l', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>