Structure of PDB 2wgq Chain B Binding Site BS02

Receptor Information
>2wgq Chain B (length=723) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AHMVPMDKTLKEFGADVQWDDYAQLFTLIKDGAYVKVKPGAQTAIVNGQP
LALQVPVVMKDNKAWVSDTFINDVFQSGLDQTFQVEKRPHPLNALTADEI
KQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKADV
IMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGMVLLDDFASVQNIINNSEE
FAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDG
NYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFDGRDRVAPAVK
PMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVTYNDNGTKR
KVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPS
NAVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQEMGQPNVSTERRE
LVVRWISTVGNYDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDET
AKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT
AGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRLLSNPNKENRMGNPVSYQ
IIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKY
PNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWV
HTLLKPWNFFDETPTLGALKKDK
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain2wgq Chain B Residue 802 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2wgq The Structure of E Coli Amine Oxidase with the Cataltyic Copper Subsituted for Zinc - a Model Precursor.
Resolution2.5 Å
Binding residue
(original residue number in PDB)		D533 L534 D535 D678 A679
Binding residue
(residue number reindexed from 1)		D529 L530 D531 D674 A675
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) Y369 D383 Y466 H524 H526 H689
Catalytic site (residue number reindexed from 1) Y365 D379 Y462 H520 H522 H685
Enzyme Commision number 1.4.3.21: primary-amine oxidase.
Gene Ontology
Molecular Function
GO:0005507 copper ion binding
GO:0005509 calcium ion binding
GO:0008131 primary methylamine oxidase activity
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0048038 quinone binding
GO:0052595 aliphatic amine oxidase activity
Biological Process
GO:0006559 L-phenylalanine catabolic process
GO:0009308 amine metabolic process
GO:0019607 phenylethylamine catabolic process
Cellular Component
GO:0042597 periplasmic space

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:2wgq, PDBe:2wgq, PDBj:2wgq
PDBsum2wgq
PubMed
UniProtP46883|AMO_ECOLI Primary amine oxidase (Gene Name=tynA)

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