Structure of PDB 2nyd Chain B Binding Site BS02

Receptor Information
>2nyd Chain B (length=348) Species: 158879 (Staphylococcus aureus subsp. aureus N315) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AMDPMKIADLMTLLDHHVPFSTAESWDNVGLLIGDEDVEVTGVLTALDCT
LEVVNEAIEKGYNTIISHHPLIFKGVTSLKANGYGLIIRKLIQHDINLIA
MHTNLDVNPYGVNMMLAKVMGLKNISIINNQQDVYYKVQTYIPKDNVGPF
KDKLSENGLAQEGNYEYCFFESEDVDEVKIEFMIDAYQKSRAEQLIKQYH
PYETPVFDFIEIKQTSLYGLGVMAEVDNQMTLEDFAADIKSKLNIPSVRF
VGESNQKIKRIAIIGGSGIGYEYQAVQQGADVFVTGDIKHHDALDAKIHG
VNLIDINHYSEYVMKEGLKTLLMNWFNIEKINIDVEASTINTDPFQYI
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain2nyd Chain B Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB2nyd Structure of a conserved hypothetical protein SA1388 from S. aureus reveals a capped hexameric toroid with two PII domain lids and a dinuclear metal center.
Resolution2.0 Å
Binding residue
(original residue number in PDB)		H64 D102 E329
Binding residue
(residue number reindexed from 1)		H68 D106 E311
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:2nyd, PDBe:2nyd, PDBj:2nyd
PDBsum2nyd
PubMed17187687
UniProtP67273|GCH1L_STAAN GTP cyclohydrolase 1 type 2 homolog (Gene Name=SA1388)

[Back to BioLiP]