Structure of PDB 2noa Chain B Binding Site BS02

Receptor Information
>2noa Chain B (length=222) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNVQGGNVLQM
MYEKPERWSFTFQTYACLSRIRAQLASLNGDAEKPVLFFERSVYSDRYIF
ASNLYESESMNETEWTIYQDWHDWMNNQGQSLELDGIIYLQATPETCLHR
IYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDV
NEDFKDKYESLVEKVKEFLSTL
Ligand information
Ligand ID3TC
InChIInChI=1S/C8H11N3O3S/c9-5-1-2-11(8(13)10-5)6-4-15-7(3-12)14-6/h1-2,6-7,12H,3-4H2,(H2,9,10,13)/t6-,7+/m0/s1
InChIKeyJTEGQNOMFQHVDC-NKWVEPMBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C1C(OC(S1)CO)N2C=CC(=NC2=O)N
OpenEye OEToolkits 1.5.0C1[C@H](O[C@H](S1)CO)N2C=CC(=NC2=O)N
CACTVS 3.341NC1=NC(=O)N(C=C1)[CH]2CS[CH](CO)O2
CACTVS 3.341NC1=NC(=O)N(C=C1)[C@@H]2CS[C@H](CO)O2
ACDLabs 10.04O=C1N=C(N)C=CN1C2OC(SC2)CO
FormulaC8 H11 N3 O3 S
Name4-AMINO-1-[(2R,5S)-2-(HYDROXYMETHYL)-1,3-OXATHIOLAN-5-YL]PYRIMIDIN-2(1H)-ONE;
(-)-L-2',3'-DIDEOXY-3'-THIACYTIDINE;
LAMIVUDINE;
EPIVIR
ChEMBLCHEMBL141
DrugBankDB00709
ZINCZINC000000012346
PDB chain2noa Chain B Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2noa Structural basis for activation of the therapeutic L-nucleoside analogs 3TC and troxacitabine by human deoxycytidine kinase.
Resolution1.8 Å
Binding residue
(original residue number in PDB)
E53 L82 F96 Q97 R128 D133 F137
Binding residue
(residue number reindexed from 1)
E34 L48 F62 Q63 R91 D96 F100
Annotation score2
Enzymatic activity
Catalytic site (original residue number in PDB) E53 R128
Catalytic site (residue number reindexed from 1) E34 R91
Enzyme Commision number 2.7.1.113: deoxyguanosine kinase.
2.7.1.74: deoxycytidine kinase.
2.7.1.76: deoxyadenosine kinase.
Gene Ontology
Molecular Function
GO:0004136 deoxyadenosine kinase activity
GO:0004137 deoxycytidine kinase activity
GO:0004138 deoxyguanosine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0019136 deoxynucleoside kinase activity
GO:0042803 protein homodimerization activity
GO:0043771 cytidine kinase activity
Biological Process
GO:0006139 nucleobase-containing compound metabolic process
GO:0006220 pyrimidine nucleotide metabolic process
GO:0009224 CMP biosynthetic process
GO:0016310 phosphorylation
GO:0106383 dAMP salvage
GO:1901135 carbohydrate derivative metabolic process
GO:1901293 nucleoside phosphate biosynthetic process
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005829 cytosol

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:2noa, PDBe:2noa, PDBj:2noa
PDBsum2noa
PubMed17158155
UniProtP27707|DCK_HUMAN Deoxycytidine kinase (Gene Name=DCK)

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