Structure of PDB 2bve Chain B Binding Site BS02

Receptor Information
>2bve Chain B (length=118) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TWGVSSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQV
VIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEI
SDSNRWLDVKGTTVTVTT
Ligand information
Ligand IDPH5
InChIInChI=1S/C19H27NO9/c1-2-14(24)20-15-12(22)8-19(18(26)27,28-10-11-6-4-3-5-7-11)29-17(15)16(25)13(23)9-21/h3-7,12-13,15-17,21-23,25H,2,8-10H2,1H3,(H,20,24)(H,26,27)/t12-,13+,15+,16+,17+,19+/m0/s1
InChIKeyXDURJXFZCXMSHL-YZKZVDITSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CCC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OCc2ccccc2)O
CACTVS 3.341CCC(=O)N[C@@H]1[C@@H](O)C[C@@](OCc2ccccc2)(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O
CACTVS 3.341CCC(=O)N[CH]1[CH](O)C[C](OCc2ccccc2)(O[CH]1[CH](O)[CH](O)CO)C(O)=O
OpenEye OEToolkits 1.5.0CCC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)O)OCc2ccccc2)O
ACDLabs 10.04O=C(O)C2(OCc1ccccc1)OC(C(O)C(O)CO)C(NC(=O)CC)C(O)C2
FormulaC19 H27 N O9
Namebenzyl 3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid;
2-PHENYL-PROP5AC;
benzyl 3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulosidonic acid;
benzyl 3,5-dideoxy-5-(propanoylamino)-D-glycero-D-galacto-non-2-ulosidonic acid;
benzyl 3,5-dideoxy-5-(propanoylamino)-D-glycero-galacto-non-2-ulosidonic acid
ChEMBL
DrugBank
ZINCZINC000016051842
PDB chain2bve Chain B Residue 1119 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2bve Crystallographic and in Silico Analysis of the Sialoside-Binding Characteristics of the Siglec Sialoadhesin.
Resolution2.2 Å
Binding residue
(original residue number in PDB)
W2 R97 S103 R105 W106 L107
Binding residue
(residue number reindexed from 1)
W2 R97 S103 R105 W106 L107
Annotation score1
Binding affinityMOAD: ic50=215uM
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:2bve, PDBe:2bve, PDBj:2bve
PDBsum2bve
PubMed17137591
UniProtQ62230|SN_MOUSE Sialoadhesin (Gene Name=Siglec1)

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