Structure of PDB 2buz Chain B Binding Site BS02
Receptor Information
>2buz Chain B (length=238) Species:
62977
(Acinetobacter baylyi ADP1) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
IIWGAYAQRNTEDHPPAYAPGYKTSVLRSPKNALISIAETLSEVTAPHFS
ADKFGPKDNDLILNYAKDGLPIGERVIVHGYVRDQFGRPVKNALVEVWQA
NASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKPGPYPWRNR
INEWRPAHIHFSLIADGWAQRLISQFYFEGDTLIDSCPILKTIPSEQQRR
ALIALEDKSNFIEADSRCYRFDITLRGRRATYFENDLT
Ligand information
Ligand ID
4NC
InChI
InChI=1S/C6H5NO4/c8-5-2-1-4(7(10)11)3-6(5)9/h1-3,8-9H
InChIKey
XJNPNXSISMKQEX-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.341
Oc1ccc(cc1O)[N+]([O-])=O
ACDLabs 10.04
[O-][N+](=O)c1cc(O)c(O)cc1
OpenEye OEToolkits 1.5.0
c1cc(c(cc1[N+](=O)[O-])O)O
Formula
C6 H5 N O4
Name
4-NITROCATECHOL
ChEMBL
CHEMBL42423
DrugBank
DB03407
ZINC
ZINC000034800312
PDB chain
2buz Chain B Residue 1542 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
2buz
Crystallographic Studies of Intradiol Dioxygenases
Resolution
1.8 Å
Binding residue
(original residue number in PDB)
Y408 Y447 W449 R457 H462
Binding residue
(residue number reindexed from 1)
Y106 Y145 W147 R155 H160
Annotation score
1
Enzymatic activity
Catalytic site (original residue number in PDB)
Y408 Y447 R457 H460 H462
Catalytic site (residue number reindexed from 1)
Y106 Y145 R155 H158 H160
Enzyme Commision number
1.13.11.3
: protocatechuate 3,4-dioxygenase.
Gene Ontology
Molecular Function
GO:0003824
catalytic activity
GO:0005506
iron ion binding
GO:0005515
protein binding
GO:0008199
ferric iron binding
GO:0016702
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0018578
protocatechuate 3,4-dioxygenase activity
GO:0046872
metal ion binding
GO:0051213
dioxygenase activity
Biological Process
GO:0009056
catabolic process
GO:0019619
3,4-dihydroxybenzoate catabolic process
GO:0042952
beta-ketoadipate pathway
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:2buz
,
PDBe:2buz
,
PDBj:2buz
PDBsum
2buz
PubMed
UniProt
P20372
|PCXB_ACIAD Protocatechuate 3,4-dioxygenase beta chain (Gene Name=pcaH)
[
Back to BioLiP
]