Structure of PDB 1vrr Chain B Binding Site BS02
Receptor Information
>1vrr Chain B (length=203) Species:
1422
(Geobacillus stearothermophilus) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
MRIVEVYSHLNGLEYIQVHLPHIWEEIQEIIVSIDAEACRTKESKEKTKQ
GQILYSPVALNEAFKEKLEAKGWKESRTNYYVTADPKLIRETLSLEPEEQ
KKVIEAAGKEALKSYNQTDFVKDRVAIEVQFGKYSFVAYDLFVKHMAFYV
SDKIDVGVEILPMKELSKEMSSGISYYEGELYNVIRQGRGVPAVPLVLIG
IAP
Ligand information
>1vrr Chain D (length=14) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
ttatagatctataa
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
1vrr
Implications for Switching Restriction Enzyme Specificities from the Structure of BstYI Bound to a BglII DNA Sequence.
Resolution
2.7 Å
Binding residue
(original residue number in PDB)
R77 K133 Y134 K164 Y176
Binding residue
(residue number reindexed from 1)
R77 K133 Y134 K164 Y176
Enzymatic activity
Enzyme Commision number
3.1.21.4
: type II site-specific deoxyribonuclease.
Gene Ontology
Molecular Function
GO:0000287
magnesium ion binding
GO:0003677
DNA binding
GO:0009036
type II site-specific deoxyribonuclease activity
GO:0042802
identical protein binding
Biological Process
GO:0009307
DNA restriction-modification system
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:1vrr
,
PDBe:1vrr
,
PDBj:1vrr
PDBsum
1vrr
PubMed
15893669
UniProt
Q84AF2
[
Back to BioLiP
]