Structure of PDB 1p4r Chain B Binding Site BS02
Receptor Information
>1p4r Chain B (length=588) Species:
9606
(Homo sapiens) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
QLALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSEL
TGFPEMLGGRVKTLHPAVHAGILARNIPEDNADMARLDFNLIRVVACNLY
PFVKTVASPGVTVEEAVEQIDIGGVTLLRAAAKNHARVTVVCEPEDYVVV
STEMQSSESKDTSLETRRQLALKAFTHTAQYDEAISDYFRKQYSKGVSQM
PLRYGMNPHQTPAQLYTLQPKLPITVLNGAPGFINLCDALNAWQLVKELK
EALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPISAAYA
RARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAPGYEEEALTIL
SKKKNGNYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNVV
TKNKDLPESALRDLIVATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIHC
TRLAGDKANYWWLRHHPQVLSMKFKTGVKRAEISNAIDQYVTGTIGEDED
LIKWKALFEEVPELLTEAEKKEWVEKLTEVSISSDAFFPFRDNVDRAKRS
GVAYIAAPSGSAADKVVIEACDELGIILAHTNLRLFHH
Ligand information
Ligand ID
354
InChI
InChI=1S/C20H23N5O8S/c21-20-23-14-6-5-12(9-13(14)18(29)24-20)34(32,33)25-11-3-1-10(2-4-11)17(28)22-15(19(30)31)7-8-16(26)27/h1-6,9,15,17,22,25,28,32-33H,7-8H2,(H,26,27)(H,30,31)(H3,21,23,24,29)/t15-,17?/m0/s1
InChIKey
JWYUKMCUDBSRPA-MYJWUSKBSA-N
SMILES
Software
SMILES
ACDLabs 10.04
O=C(O)C(NC(O)c1ccc(cc1)NS(O)(O)c3cc2c(nc(nc2O)N)cc3)CCC(=O)O
OpenEye OEToolkits 1.5.0
c1cc(ccc1C(N[C@@H](CCC(=O)O)C(=O)O)O)NS(c2ccc3c(c2)c(nc(n3)N)O)(O)O
CACTVS 3.341
Nc1nc(O)c2cc(ccc2n1)[S](O)(O)Nc3ccc(cc3)[C@H](O)N[C@@H](CCC(O)=O)C(O)=O
OpenEye OEToolkits 1.5.0
c1cc(ccc1C(NC(CCC(=O)O)C(=O)O)O)NS(c2ccc3c(c2)c(nc(n3)N)O)(O)O
CACTVS 3.341
Nc1nc(O)c2cc(ccc2n1)[S](O)(O)Nc3ccc(cc3)[CH](O)N[CH](CCC(O)=O)C(O)=O
Formula
C20 H23 N5 O8 S
Name
N-[(S)-(4-{[(2-AMINO-4-HYDROXYQUINAZOLIN-6-YL)(DIHYDROXY)-LAMBDA~4~-SULFANYL]AMINO}PHENYL)(HYDROXY)METHYL]-L-GLUTAMIC ACID
ChEMBL
DrugBank
ZINC
PDB chain
1p4r Chain A Residue 1801 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
1p4r
Crystal structures of human bifunctional enzyme aminoimidazole-4-carboxamide ribonucleotide transformylase/IMP cyclohydrolase in complex with potent sulfonyl-containing antifolates
Resolution
2.55 Å
Binding residue
(original residue number in PDB)
K266 M312 F315 G316 N489
Binding residue
(residue number reindexed from 1)
K262 M308 F311 G312 N485
Annotation score
1
Binding affinity
PDBbind-CN
: -logKd/Ki=8.10,Ki=8nM
Enzymatic activity
Catalytic site (original residue number in PDB)
K266 H267 N431 H592
Catalytic site (residue number reindexed from 1)
K262 H263 N427 H588
Enzyme Commision number
2.1.2.3
: phosphoribosylaminoimidazolecarboxamide formyltransferase.
3.5.4.10
: IMP cyclohydrolase.
Gene Ontology
Molecular Function
GO:0003824
catalytic activity
GO:0003937
IMP cyclohydrolase activity
GO:0004643
phosphoribosylaminoimidazolecarboxamide formyltransferase activity
GO:0016740
transferase activity
GO:0016787
hydrolase activity
GO:0042803
protein homodimerization activity
GO:0045296
cadherin binding
Biological Process
GO:0003360
brainstem development
GO:0006139
nucleobase-containing compound metabolic process
GO:0006164
purine nucleotide biosynthetic process
GO:0006177
GMP biosynthetic process
GO:0006189
'de novo' IMP biosynthetic process
GO:0021549
cerebellum development
GO:0021987
cerebral cortex development
GO:0031100
animal organ regeneration
GO:0044208
'de novo' AMP biosynthetic process
GO:0046452
dihydrofolate metabolic process
GO:0046654
tetrahydrofolate biosynthetic process
GO:0097294
'de novo' XMP biosynthetic process
GO:0098761
cellular response to interleukin-7
Cellular Component
GO:0005737
cytoplasm
GO:0005829
cytosol
GO:0005886
plasma membrane
GO:0016020
membrane
GO:0070062
extracellular exosome
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:1p4r
,
PDBe:1p4r
,
PDBj:1p4r
PDBsum
1p4r
PubMed
14966129
UniProt
P31939
|PUR9_HUMAN Bifunctional purine biosynthesis protein ATIC (Gene Name=ATIC)
[
Back to BioLiP
]