Structure of PDB 1n1z Chain B Binding Site BS02

Receptor Information
>1n1z Chain B (length=517) Species: 38868 (Salvia officinalis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
WDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLK
YLGLSDFFQDEIKEILGVIYNEHKCFHMDLYFTALGFRLLRQHGFNISQD
VFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATK
CLQKKLDEEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNP
LIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFW
AVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRW
DTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLV
EAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTA
VIDSLYQYHDILCLAGIILRLPDDLGTELARGDVPKTIQCYMKETNASEE
EAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGD
GSKTYEHIAGLLFEPYA
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain1n1z Chain B Residue 705 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB1n1z Bornyl diphosphate synthase: Structure and strategy for carbocation manipulation by a terpenoid cyclase
Resolution2.3 Å
Binding residue
(original residue number in PDB)		D351 D355
Binding residue
(residue number reindexed from 1)		D278 D282
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) R314 W323 I344 D351 D355 S451 V452 A453 R493 D496 T500 E504 Y572 D576
Catalytic site (residue number reindexed from 1) R241 W250 I271 D278 D282 S378 V379 A380 R420 D423 T427 E428 Y496 D500
Enzyme Commision number 4.2.3.116: (+)-camphene synthase.
4.2.3.121: (+)-alpha-pinene synthase.
5.5.1.8: (+)-bornyl diphosphate synthase.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0010333 terpene synthase activity
GO:0016829 lyase activity
GO:0016853 isomerase activity
GO:0042803 protein homodimerization activity
GO:0046872 metal ion binding
GO:0047926 geranyl-diphosphate cyclase activity
GO:0050550 pinene synthase activity
GO:0102703 camphene synthase activity
Biological Process
GO:0016102 diterpenoid biosynthetic process
GO:0016114 terpenoid biosynthetic process
GO:0046211 (+)-camphor biosynthetic process
Cellular Component
GO:0009507 chloroplast

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:1n1z, PDBe:1n1z, PDBj:1n1z
PDBsum1n1z
PubMed12432096
UniProtO81192|BPPS_SALOF (+)-bornyl diphosphate synthase, chloroplastic

[Back to BioLiP]