Structure of PDB 1i6u Chain B Binding Site BS02

Receptor Information
>1i6u Chain B (length=127) Species: 2190 (Methanocaldococcus jannaschii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFI
EDGRAGIFKVELIGKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILI
VSTTQGVMSHEEAKKRGLGGRLLAYVY
Ligand information
>1i6u Chain D (length=37) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gggcccgguaagucucuucggagauacugccgggccc
<<<<<<<<<.<<<<<<....>>>>..>>>>>>>>>>>
Receptor-Ligand Complex Structure
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PDB1i6u Detailed analysis of RNA-protein interactions within the ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii.
Resolution2.6 Å
Binding residue
(original residue number in PDB)		S31 K32 R36 A58 R78 P80 K82 K83 S105 T106 T107 G120 G122 R124
Binding residue
(residue number reindexed from 1)		S28 K29 R33 A55 R75 P77 K79 K80 S102 T103 T104 G117 G119 R121
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1i6u, PDBe:1i6u, PDBj:1i6u
PDBsum1i6u
PubMed11478863
UniProtP54041|RS8_METJA Small ribosomal subunit protein uS8 (Gene Name=rps8)

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