Structure of PDB 1gt1 Chain B Binding Site BS02

Receptor Information

>1gt1 Chain B (length=155) Species: 9913 (Bos taurus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

EEEAEQNLSELSGPWRTVYIGSTNPEKIQENGPFRTYFRELVFDDEKGTV
DFYFSVKRDGKWKNVHVKATKQDDGTYVADYEGQNVFKIVSLSRTHLVAH
NINVDKHGQTTELTELFVKLNVEDEDLEKFWKLTEDKGIDKKNVVNFLEN
ENHPH

Ligand information

Ligand ID

3OM

InChI

InChI=1S/C8H16O/c1-3-5-6-7-8(9)4-2/h4,8-9H,2-3,5-7H2,1H3/t8-/m1/s1

InChIKey

VSMOENVRRABVKN-MRVPVSSYSA-N

SMILES

Software	SMILES
OpenEye OEToolkits 1.7.6	CCCCC[C@@H](C=C)O
CACTVS 3.385	CCCCC[CH](O)C=C
ACDLabs 12.01	OC(/C=C)CCCCC
CACTVS 3.385	CCCCC[C@H](O)C=C
OpenEye OEToolkits 1.7.6	CCCCCC(C=C)O

Formula

C8 H16 O

Name

(3S)-1-octen-3-ol

PDB chain

1gt1 Chain B Residue 1159 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	1gt1 Crystal Structures of Bovine Odorant-Binding Protein in Complex with Odorant Molecules.
Resolution	1.71 Å
Binding residue (original residue number in PDB)	I22 F36 T38 N87 N103
Binding residue (residue number reindexed from 1)	I20 F34 T36 N85 N101
Annotation score	1
Binding affinity	MOAD: Kd=1.2uM

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0005549	odorant binding
GO:0036094	small molecule binding

	Biological Process
GO:0007608	sensory perception of smell

	Cellular Component
GO:0005576	extracellular region
GO:0005615	extracellular space

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Molecular Function

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Cellular Component

External links

PDB	RCSB:1gt1, PDBe:1gt1, PDBj:1gt1
PDBsum	1gt1
PubMed	15373829
UniProt	P07435\|OBP_BOVIN Odorant-binding protein

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