Structure of PDB 1doh Chain B Binding Site BS02
Receptor Information
>1doh Chain B (length=271) Species:
148305
(Pyricularia grisea) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
YDAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYAN
STESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVC
SNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM
GSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIK
TDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFL
ASNDGGWVTGKVIGIDGGACM
Ligand information
Ligand ID
NID
InChI
InChI=1S/C9H5NO3/c11-9-5-4-6-7(9)2-1-3-8(6)10(12)13/h1-5H
InChIKey
UUNZJPCKMDLQPO-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.341
[O-][N+](=O)c1cccc2C(=O)C=Cc12
OpenEye OEToolkits 1.5.0
c1cc2c(c(c1)[N+](=O)[O-])C=CC2=O
ACDLabs 10.04
[O-][N+](=O)c1cccc2c1C=CC2=O
Formula
C9 H5 N O3
Name
4-NITRO-INDEN-1-ONE
ChEMBL
DrugBank
DB04479
ZINC
ZINC000003871028
PDB chain
1doh Chain B Residue 503 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
1doh
Structures of trihydroxynaphthalene reductase-fungicide complexes: implications for structure-based design and catalysis.
Resolution
2.1 Å
Binding residue
(original residue number in PDB)
Y178 G210 Y216 C220 Y223 M283
Binding residue
(residue number reindexed from 1)
Y166 G198 Y204 C208 Y211 M271
Annotation score
1
Binding affinity
MOAD
: Ki=2.4nM
Enzymatic activity
Catalytic site (original residue number in PDB)
G40 S164 H175 Y178 K182 Y223
Catalytic site (residue number reindexed from 1)
G28 S152 H163 Y166 K170 Y211
Enzyme Commision number
1.1.1.252
: tetrahydroxynaphthalene reductase.
Gene Ontology
Molecular Function
GO:0016491
oxidoreductase activity
GO:0047039
tetrahydroxynaphthalene reductase activity
Biological Process
GO:0042438
melanin biosynthetic process
Cellular Component
GO:0005575
cellular_component
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:1doh
,
PDBe:1doh
,
PDBj:1doh
PDBsum
1doh
PubMed
11342131
UniProt
Q12634
|T4HR_PYRO7 Tetrahydroxynaphthalene reductase (Gene Name=MGG_02252)
[
Back to BioLiP
]