Structure of PDB 1bdv Chain B Binding Site BS02

Receptor Information
>1bdv Chain B (length=53) Species: 10754 (Lederbergvirus P22) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKGMSKMPQVNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGR
IGA
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB1bdv Origins of DNA-binding specificity: role of protein contacts with the DNA backbone.
Resolution2.8 Å
Binding residue
(original residue number in PDB)		M1 G3 M4 S5 S32 V33 N34
Binding residue
(residue number reindexed from 1)		M1 G3 M4 S5 S32 V33 N34
Binding affinityPDBbind-CN: Kd=17nM
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0006355 regulation of DNA-templated transcription

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:1bdv, PDBe:1bdv, PDBj:1bdv
PDBsum1bdv
PubMed9927650
UniProtP03050|RARC_BPP22 Transcriptional repressor arc (Gene Name=arc)

[Back to BioLiP]