Structure of PDB 6z1p Chain Ae Binding Site BS02

Receptor Information
>6z1p Chain Ae (length=337) Species: 312017 (Tetrahymena thermophila SB210) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SITNYSIKPVKYELKINEQPGKMPILVRKPDEILVKQWWSQSPFEKTQPL
RVPVLKFLAENGQAYTGKTVDLDHDIFNVPLRRDIVHSYVLWRQNRDEIK
THITKTKGTVSGSGKKPYAQKGTGKARMGNKRAPGRKKGGKAHGAKPRIL
RYPLNKKIRLQALKVVLSAKLAEGKLRIIETEQVDEPKTRAIAKMLEKMD
KRSRILIVHPYQIDTNFELAHQNIQKLQSCYPNELSVLKVLTNDRVFITL
EALRQLTQELQDRTFRNYRMKHVERGVTESEAEREQVWPTPKQQDTKVIY
DPTKPLQFKFKILQDYYEQYEKLKENGEIQKYRENIE
Ligand information
>6z1p Chain Ab (length=2237) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaguaaauuucaauaaguuuuugaaauugaaaaauagagaucuaccucua
aaacuuguaaaguuuaaauucaauagaaaacaguaccgcgagggaaaggu
gaaaagauuuuauaauaucuuaaaagaaccugaaauuuagugcuaaauac
aguuaaagcuuuauuguuuuaacguaccuuuugcauaaugggcuagcgag
uuuauauaauuagcgaguaauuuaaauuuuauaaaauuacgaaucgauag
aauaaauaguuaauuauauaagacccgaagcuaagugaucuaauuaugau
uagauuaaggguauuuauaccugaggaucgaacucuuaaauguugcaaaa
uuuugggauaaauuguaauuaggggugaaaggcuuaucaaacuuaguuau
agcugguuuuccacgaaaccuauuuaaguaggguguuauuuuuuauaaua
auuagguuuaaauaacuauaucuauaauuaauuuguuaauuauaaaauua
guauauaauaauuaguuauuauuagauaauaaccagacuauuagcgcuaa
gguuuauagucaagagagaaacagcucagauuaaacaauaaggucuuuaa
aaauaaauaauuauggagauuauuuuuguuaauacuaauaagauguaggc
uuggaagcagccaucauuuuaaaaaagcguaaaagcuuaauauuagauaa
auuaauguuaaaaauuaauugauacuuaaauaaucauagaugaagagaga
auaauuuuuauuuaccgaauugauaaaucgaaagaugguaguggaacguu
uuguauaaaaaaauaaaauugugaaauuuuauauuuuaucaauauugaua
augcuagcaugaguaguagacauaaugugagaaucauuaucgccugauau
acaaggguuacuaaauuugauaaucuuauuuaguguaagucgauuucuaa
gauauaaaaguauauuguuaucaaugaauauaaaauauaaaauaucuaau
aaacuacuuuuuauauuauauaaaauuuuuuauaauauaggugguuuagu
gacuggaaauguuuauauuuuauuaaaucguacuaacucuaacacaagug
uuuaaguagaauauauaauggcgaaggaguaaaaaguauugaaggaacua
ggcaaaauaacccuguaacuuugggagaaagggggcuuuuaagcaacuga
aaagagagaguagcgacuguuuaauaaaaacauaagauuuugcaaaauuu
aaauaugauguauaaaaucugacaccugcccggugcugcaaggugaaucu
auuuuaguuaacgcugaaauauuaaaccccaguaaacggcggccguaacc
cugacgguccuaagguagcaaaauuccuuggcggguaaguuccguccugc
augaaugguguaacgacugcucugcugucuccaauacuugcucuacgaaa
uugaacuuuccgugaagaugcggcaauauuacaacuagacgggaagaccc
uaugcaccuuuacuguuaucuguaauuaauuuaauuacauauaaauaaaa
uaaauuuuaauuauuuuuguuauugaaagacaguuugacuggggcggucu
ccuccuaaaaaguaacggaggaguauaauaauuugggguaucuuauuuua
auugagaucaauauuagaaugaauauacuaaauuugauuagaguacaaac
aaguauucuaaggauauaugucugucauauugacccgauauaauuuagua
gaaaauauaucgaucaacgaauaaaagguacgcuagggauaacaggcuua
uggguuuugagaguucuuauuaauaaacccguuuggcaccucgaugucgg
cucaucacauccugaugguggacaaucuaucaaggguccggcuguucgcc
gguuaaagugguacgugagcuggguuuaaaacgucgugagacaguuuggu
cccuaucuguuguaauuacaagaaaauaaauaagaauuaacuuuaguacg
agaggacuaggaaaauuuaaucacugguuugaaaauuacuuuaauaaaua
aaaguacgguuuuuaagcuaaauuaaacaagauaauugcugaauucuaua
uaagcaagaaucuaacuuauauuauuuucuaauaaacuuuuuaaagacua
uauuauuuaaguauauuuauuaagagucauuauaacuaauaaauauaaau
auacuaaauguuuaauaaucacuacaguuuaguuuuu
.....<<<<<<<<.......>>>>>>>>......<<<<<..((((>>>>>
...................................<<....>>.......
..................................................
.<<<<<<<<......>>>>>>>>...<.<........>.>.<<<<<<...
.<<<<<<<<<<<<...<<<..................>>>...<<....>
>........>>>>>>>>>>>>..<<.<...<<<<<<.....<<<<<<<<<
..<<<...<<<<<<..>>>>>>....>>>...<<<..<<<<........>
>>>.>>>....>>>>>>>>>...<<<.....>>>......>>>>>>....
..>.>>..<<<<<<....<<<<<....>>>>><<<<<<<<....<<<<<<
<<<.....<..<<.<<<<..<..<<<<<<<<....>>>>>>>>..>..>>
>>..>>.>.....>>>>>>>>>..>>>>>>.>>..<<<<<<.<<<.....
.>>>.>>>>>>....<<<......>>>...<<<..<<<...<<<(((...
<<<<<<<..........<<<<<<<<....<<...<<<<<<..<<<..<<<
<.......>>>>..>>>.......<<<<......>>>>..>>>>>>...<
<<<<...........>>>>>..>>...>>>>>>>>...........))).
......>>>>>>>>>>...>>>.>>><<<....>>>....>>>>>><<..
<<<...<<....<<<<<<<<....>>>>>>>>...>>..>>>...>>...
..>>>>>><......<<....<<<<<<.......>>>>>><<<<....<.
<<..<....<<<<<<.............>>>>>>.......<<<.<<...
<<<....<<.....>>...>>>...>>....<<<<<<<<<<...<<...<
<<<<<<<.....<<<<<<<<....[[.[[.>>>>>>>>..>>>>>>>>..
>>.........>>>>>>>>>>.....>>>....>....<<......>>.>
>.>..<<<.....>>>...>>>>..<<<<<...<<<<<<<..<<......
..........<<<<...............>>>>.<<......>>......
......<<<<<<<<<..<<<.........>>>..<<<<<<<.....<<..
....>>.......>>>>>>>.<<<<<.<<<..<<<<<<...<<<.....<
<<<<<<<<....>>>>>>>>>....>>>.>>>>..>>>>><<<<<<....
...>>>>>>........<...........<<<<<.......>>>>>....
.>....>>>>>..>>.>>>>>>>.....>>..>>>>>>>>>>>>>>....
.>.....<.<<<........>>>.>..<<<<<<<<.<<<.<<<.....<<
<<.<.<<<<..<<<<...<<.<<<<<<<<<<.>>>>>.<.<<<<......
..........>>>>.>..>>>>>.>>....>>>>..<<<<.....>>>><
<<<<<...........>>>>>>..<<...<<<<<<<...<<<<<<.....
..>>>>>>....<<<...(((>>>...>>>>>>>...<<<<<<<<<....
..>>>>>>>>>.<<<....>>>.>>))).......<<<<<<.<<<..)))
)..>>>>>>>>>.............>>>>...>>>>>.......<<<<..
.<<<<<<...<<.......>>...>>>>>>....>>>.>.......<.<<
<.<<<<<<..<<<<<<<<........>>>>>>..>>.<<<<<.....>>>
>>.....>>>>>..>...>>>..>....<<<<<<<....>>>.>>>>...
>>>..>>>>>>>>>>>....<<<<<<<<.<<<<<.<<<..<<<.......
........>>>..>>><<<<<....<<<..<<<<<<<<<<<<...]]]].
>>>>>>..>>>>>>..>>>..>>>>>...<<<...<<<<<..........
..>>>>>...>>>..>>>>>..>>>>>>>>...<<<<.<..<<.......
>>..>....<<<<<<<<<<<.........<.......>......>>>>>>
>>>>>....>>>>........................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6z1p Ciliate mitoribosome illuminates evolutionary steps of mitochondrial translation.
Resolution3.7 Å
Binding residue
(original residue number in PDB)
R103 H108 Y110 R114 R117 K121 T122 H123 T125 K126 T127 K128 S132 G133 S134 K136 K137 Q141 K142 G145 K146 A147 R148 G150 N151 R153 G156 R157 K158 K159 K162 A163 H164 K167 R169 R172 Y173 P174 N176 K177 K178 I179 R180 R225 Q246 K247 N254 E255 R285 R288 Y290 M292
Binding residue
(residue number reindexed from 1)
R82 H87 Y89 R93 R96 K100 T101 H102 T104 K105 T106 K107 S111 G112 S113 K115 K116 Q120 K121 G124 K125 A126 R127 G129 N130 R132 G135 R136 K137 K138 K141 A142 H143 K146 R148 R151 Y152 P153 N155 K156 K157 I158 R159 R204 Q225 K226 N233 E234 R263 R266 Y268 M270
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:6z1p, PDBe:6z1p, PDBj:6z1p
PDBsum6z1p
PubMed32553108
UniProtI7MGP2

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