Structure of PDB 4v4r Chain AY Binding Site BS02
Receptor Information
>4v4r Chain AY (length=333) Species:
300852
(Thermus thermophilus HB8) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
LEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLED
LEQAAEREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAA
LFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTF
KYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDV
MRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRS
RLLEMKRAEEAERLRKTRLAQIGTGERSEKIRTYNFPQSRVTDHRIGFTT
HDLEGVLSGHLTPILEALKRADQERQLAALAEG
Ligand information
>4v4r Chain AX (length=17) [
Search RNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
uguucuaguacaauaau
.................
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
4v4r
Crystal Structures of the Ribosome in Complex with Release Factors RF1 and RF2 Bound to a Cognate Stop Codon.
Resolution
5.9 Å
Binding residue
(original residue number in PDB)
R191 I192 H193
Binding residue
(residue number reindexed from 1)
R170 I171 H172
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003747
translation release factor activity
GO:0016149
translation release factor activity, codon specific
Biological Process
GO:0006412
translation
GO:0006415
translational termination
Cellular Component
GO:0005737
cytoplasm
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:4v4r
,
PDBe:4v4r
,
PDBj:4v4r
PDBsum
4v4r
PubMed
16377566
UniProt
P96077
|RF1_THET8 Peptide chain release factor 1 (Gene Name=prfA)
[
Back to BioLiP
]