Structure of PDB 4v4f Chain AM Binding Site BS02

Receptor Information

>4v4f Chain AM (length=71) Species: 1422 (Geobacillus stearothermophilus)

TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSA
IKVRGKAYIQTRHGVIESEGK

Ligand information

• Ligand ID: TRP
• InChI: InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/t9-/m0/s1
• InChIKey: QIVBCDIJIAJPQS-VIFPVBQESA-N
• SMILES:
  ACDLabs 10.04: O=C(O)C(N)Cc2c1ccccc1nc2
  OpenEye OEToolkits 1.5.0: c1ccc2c(c1)c(c[nH]2)C[C@@H](C(=O)O)N
  OpenEye OEToolkits 1.5.0: c1ccc2c(c1)c(c[nH]2)CC(C(=O)O)N
  CACTVS 3.341: N[CH](Cc1c[nH]c2ccccc12)C(O)=O
  CACTVS 3.341: N[C@@H](Cc1c[nH]c2ccccc12)C(O)=O
• Formula: C11 H12 N2 O2
• Name: TRYPTOPHAN
• ChEMBL: CHEMBL54976
• DrugBank: DB00150
• ZINC: ZINC000000083315
• PDB chain: 4v4f Chain AN Residue 301

Receptor-Ligand Complex Structure

Structure summary

• PDB: 4v4f The Interaction of RNA with Trap: The Role of Triplet Repeats and Separating Spacer Nucleotides
• Resolution: 1.9 Å
• Binding residue (original residue number in PDB): G223 H234 Q247 T249 T252
• Binding residue (residue number reindexed from 1): G19 H30 Q43 T45 T48
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0003723 RNA binding
• GO:0005515 protein binding
• GO:0042802 identical protein binding

Biological Process

• GO:0006353 DNA-templated transcription termination
• GO:0006355 regulation of DNA-templated transcription

External links

• PDB: RCSB:4v4f, PDBe:4v4f, PDBj:4v4f
• PDBsum: 4v4f
• PubMed: 15050822
• UniProt: Q9X6J6|MTRB_GEOSE Transcription attenuation protein MtrB (Gene Name=mtrB)