Structure of PDB 4v4a Chain AM Binding Site BS02

Receptor Information
>4v4a Chain AM (length=125) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEA
EVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQ
RTRTNARTRKGPRKTVAGKKKAPRK
Ligand information
>4v4a Chain B0 (length=2825) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggucaagauaguaaggguccacgguggaugcccuggcgcuggagccgaug
aaggacgcgauuaccugcgaaaagccccgacgagcuggagauacgcuuug
acucggggauguccgaauggggaaacccaccucguaagagguauccgcaa
ggaugggaacucagggaacugaaacaucucaguaccugaaggagaagaaa
gagaauucgauuccguuaguagcggcgagcgaacccggaucagcccaaau
ucaaccccucaagccgaaguggcuggaaagcuacaccucagaaggugaga
guccuguaggcgaacgagcgguugacuguaaggucguuguucgugaaacg
augacugaauccgcgcggaccaccgcgcaaggcuaaauacucccagugac
cgauagcgcauaguaccgugagggaaaggugaaaagaaccccgggagggg
agugaaagagaaccugaaaccguggacuuacaagcagucauggcaccuua
ugcguguuauggcgugccuauugaagcaugagccggcgacuuagaccuga
cgugcgagcuuaaguugaaaaacggaggcggagcgaaagcgaguccgaau
agggcggcauuaguacgucgggcuagacucgaaaccaggugagcuaagca
ugaccagguugaaacccccgugacagggggcggaggaccgaaccggugcc
ugcugaaacagucucggaugaguuguguuuaggagugaaaagcuaaccga
accuggagauagcuaguucuccccgaaauguauugagguacagccucgga
uguugaccauguccuguagagcacucacaaggcuaagggcacguaaugug
uucuaaaccuuaugaaacuccgaaggggcacgcguuuaguccgggaguga
ggcugcgagagcuaacuuccguagccgagagggaaacaacccagaccauc
agcuaaggucccuaaaugaucgcucagugguuaaggaugugucgucgcau
agacagccaggagguuggcuuagaagcagccacccuucaaagagugcgua
auagcucacuggucgagugacgaugcgccgaaaaugaucggggcucaagu
gaucuaccgaagcuauggauucaacucgcgaagcgaguugucugguaggg
gagcguucaguccgcggagaagccauaccggaaggagugguggagccgac
ugaagugcggaugccggcaugaguaacgauaaaagaagugagaaucuucu
ucgccguaaggacaaggguuccuggggaagggucguccgcccagggaaag
ucgggaccuaaggugaggccgaacggcgcagccgauggacagcaggucaa
gauuccugcaccgaucauguggagugauggagggacgcauuacgcuaucc
aaugccaagcuauggcuaugcugguugguacgcucaagggcgaucggguc
agaaaaucuaccggucacaugccucagacguaucgggagcuuccucggaa
gcgaaguuggaaacgcgacggugccaagaaaagcuucuaaacguugaaac
augauugcccguaccgcaaaccgacacagguguccgagugucaaugcacu
aaggcgcgcgagagaacccucguuaaggaacuuugcaaucucaccccgua
acuucggaagaagggguccccacgcuucgcguggggcgcagugaauaggc
ccaggcgacuguuuaccaaaaucacagcacucugccaacacgaacagugg
acguauagggugugacgccugcccggugccggaaggucaaguggagcggu
aagugcaagcaaagcugcgaaaugaagccccggugaacggcggccguaac
uauaacgguccuaagguagcgaaauuccuugucggguaaguuccgaccug
cacgaaaggcguaacgaucugggcgcugucucaacgagggacucggugaa
auugaauuggcuguaaagaugcggccuacccguagcaggacgaaaagacc
ccguggagcuuuacuauagucuggcauucaacguugggacguggugcgua
ggauaggugggaggcgaagaacccuggcuacggcuggggggagccgccgg
ugaaauaccacccucuacucuuugacguuguaaccugaaaaaucacuuuc
ggggaccgugcuuggcggguaguuugacuggggcggucgccucccaaaau
guaacggaggcgcccaaaggucaccucaagacgguuggaaaucgucugua
gagcgcaaagguagaagguggcuugacugcgagacugacacgucgagcag
ggaggaaacucgggcuuagugaaccggugguaccguguggaagggccauc
gaucaacggauaaaaguuaccccggggauaacaggcugaucucccccgag
aguccauaucggcggggagguuuggcaccucgaugucggcucgucgcauc
cuggggcugaagaaggucccaaggguugggcuguucgcccauuaaagcgg
cacgcgagcuggguucagaacgucgugagacaguucggucucuauccgcu
acgggcgcaggagaauugaggggaguugcuccuaguacgagaggaccgga
gugaacggaccgcuggucucccugcugucguaccaacggcacaugcaggg
uagcuauguccggaacggauaaccgcugaaagcaucuaagcgggaagcca
gccccaagaugaguucucccacuguucagguaagacucccggaagaccac
cggguuaagaggccaggcgugcacgcauagcaauguguucagcggacugg
ugcucaucagucgaggucuugacca
<<<<<<<<......<<<<<<<<<<<....<<<..<<<<<<<<<<<<....
..<<<<<<<((..((>>>>.....<<<<<<...<<.))..))..>>....
..>>>>>>...>>>....<<<....>>><<<<<....>>>>><<<<....
>>>>>>...<<<<<<.....<<....>>......>>>>>.>.........
<<....>>...<<<<......<<.....>>.....>>>>...<<<.....
<<<<<<.<<<..<<<....<<<<......>>>>.((......<<<.....
))>>>...>>>....>>>.>>>>>>......<<<<<<<<<.......>>>
>>>>>>......<<<<<..((((>>>>>..>>>......>>.>>>>>>.>
>..............<<....>>....>>.........<<<<....>>>>
.............>....>>>>>>>>>>>.......<<<<<<<<<<....
...>>>>>>>>>>...<.<........>.>.<<<<<<....<<<.<<<<<
<<<<...<<<...<<......>>...>>>...<<....>>...<<.....
..>>.........>>>>>>>>>>>>..<<.<...<<<<<<....<<<<<<
<<<<..<<<.....<<<<<......>>>>>......>>>...<<<..<.<
<........>>.>.>>>....>>>>>>>>>>..<<.......>>......
>>>>>>......>.>>..<<<<<<....<<<<<....>>>>><<<<<<<<
<...<<<<.<<<<<....<<<...<<<.<<<<...<<<<<<<<...>>>>
>>>>...>>>>.>>>..>>.>....>>>>>.>.>>>..>>>>>>>.>>..
<<<<<<<.<<......>>.>>>>>>>....<<<......>>>...<<<<.
<<<...<<<(((.....<<<<<<...........<<..<<<<<<<<....
.....<<<<<.<<...<<<<.......>>>>...>>.........<<...
...>>...>>>>>.....>>>>>>>>.>>..........)))......>>
>>>>.>>>...>>>>>>>...<<<<<<<.....>>>>>>>.......>>>
>>>..<<<<<<<.<<......<<<<<.<<....>>.>>>>>...>>.>>>
>>>>........>>>>>><......<<.....<<<<<<.......>>>>>
><<<<....<<<<..<.<..<<<<<<...<<.....>>.>>>>>>....(
(<<<<.<<...<<<...<<<<..>>>>...>>>...>>...<<<<<....
....>>>>>))<<<<<<<<<...<<...<<<<....<<<<..<<<..<<<
<<.<<<<.<<...[[....>>>>>>..<<<<<.<<.<<<.<<<<<<<...
..........>>>>>>....>>>>..>>>>>>>.....<<<<<....>>>
>>....>>>>>...>>>...>>>>.........>>>>...>>......>>
>>>>>>>>>>>..>>.....<<......>>.>>>>.<<<<<....>>>>>
..>>>>..<<<<....<<<<<<<<.<<...............<<<<<...
............>>>>><<<<<<<<...>>>>>>>>............<<
<<<<<<<..<<...........>>..<<<<<<<.....<<<.....>>>.
......>>>>>>>.<<<<<.<<<..<<<<<<<..<<<...<<...<<<<<
..<<....>>...>>>>>...>>...>>>>>>>>..>>>>><<<<<<<..
..>.>>>>>>........<...........<<<<<<.....>>>>>>...
..>....>>>>>..>>.>>>>>>>.....>>.>>>>>>>>.>>>>>>...
..>.....<<<<<........>>>>>..<<<<<<<<.<<<.........<
<<<.<<<<<<..<<<<<.<<<.<<<<..<<<<<<<<<<..<<<<......
.....<<<<<..<<<......<<<<<<<....>>>>>>>...>>>.....
.......>>>>>..>>>>..>>>>>>>>>>...<<<<<<........>>>
>>>.....>>>>.>>>..>>>>>..<<<<.....>>>><<<<<<......
.....>>>>>>..<<...<<<<<<<...<<<<<<.......>>>>>>...
..<....(((.>....>>>>>>>...<<<<..<<<......>>>..>>>>
.<<<....>>>.>>))).......<<<<<<<.<<..))))..>>>>>>>>
>.............>>>>..>>>>>>.......<<<<.<<<<<<<<.<.<
<.......>>..>>>>>>>>..>>>>.>.......<<<<<.<.<<<<..<
<<<<<<<<......>>>>>>>..>>.<<<<<.....>>>>>.....>>>>
...>...>>>.>>....<<<<<<<....>>>.>>>>........>>>>>>
>>>>>....<<<<<<<...<<<<..<<<<<<<...............>>>
>>>>.<<<<<...<<<<...<<<<<<<<<<<.]].>>>>>>...>>>>>.
..>>>>.>>>>>....<<.<..<<<<.............>>>>...>>>.
.>>>>.......>>>>>>>..<<<..>>>....<<<<<<<<<.......>
>>>>....<<<<<<<<.<<<....<<<<<....>>>>>...>>>..>>>>
>.>>>...>>>>....>>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v4a X-ray crystal structures of the WT and a hyper-accurate ribosome from Escherichia coli
Resolution9.5 Å
Binding residue
(original residue number in PDB)
K79 M82 R93
Binding residue
(residue number reindexed from 1)
K78 M81 R92
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Fri Nov 29 19:47:58 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v4a', asym_id = 'AM', bs = 'BS02', title = 'X-ray crystal structures of the WT and a hyper-accurate ribosome from Escherichia coli'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v4a', asym_id='AM', bs='BS02', title='X-ray crystal structures of the WT and a hyper-accurate ribosome from Escherichia coli')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003676,0003723,0003735,0005840,0006412', uniprot = '', pdbid = '4v4a', asym_id = 'AM'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003676,0003723,0003735,0005840,0006412', uniprot='', pdbid='4v4a', asym_id='AM')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>