Structure of PDB 8apn Chain AD Binding Site BS02

Receptor Information
>8apn Chain AD (length=46) Species: 353565 (Polytomella magna) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKVRGKVKLFCDGCVRTIVRLAKEKHIVLVECSKNPRHKQRSKFAR
Ligand information
>8apn Chain A8 (length=350) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cguucuucaaccaacggaauaaagcuacgcuagggauaacaggcuuauuc
gcucacagaguuuuaucgacgagcgcgguuggcaccucgauguuggauca
ccgcuuccuguagcugcaaacgguuauaaggguuagacuguucgucugau
aaugcgguacgugaucugaguucaaagcgucguaagacaguuugguuucu
aucuuuguuagcauaaguauuacggcguuguguacaguacgaaaggauug
uugcacaauuaaccaauaguuuaaagagcaacguuaauaaaccggaaaac
uuuuaacugcacugugcaguugcaggcaaagcaauguucagcuaaaaaaa
.........................................<<<<.<..<
<<<<...<<......>>...>>>>>....>>>>.>.......<<<<<.<<
<<<<..<<<<<<<<<......>>>>>>..>>>.<<<<<.....>>>>>..
...>>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>.......
..............<<<<.<<.<<<...<<<<<<................
.>>>>>>.<<<<<.....<<.......>>...>>>>>....>>>..>>>>
>>...................<<..<<<......>>>...>>........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8apn Structure of a mitochondrial ribosome with fragmented rRNA in complex with membrane-targeting elements.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		M7 K8 G11 K12 K14 N41 R43 K49
Binding residue
(residue number reindexed from 1)		M1 K2 G5 K6 K8 N35 R37 K43
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Dec 3 00:57:57 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8apn', asym_id = 'AD', bs = 'BS02', title = 'Structure of a mitochondrial ribosome with fragm...rRNA in complex with membrane-targeting elements.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8apn', asym_id='AD', bs='BS02', title='Structure of a mitochondrial ribosome with fragm...rRNA in complex with membrane-targeting elements.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '8apn', asym_id = 'AD'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='8apn', asym_id='AD')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>