Structure of PDB 8bpu Chain AAA Binding Site BS02

Receptor Information
>8bpu Chain AAA (length=129) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGS
TDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVS
DGNGMNAWVAWRNRCKGTDVQAWIRGCRL
Ligand information
Ligand IDR2U
InChIInChI=1S/6H2O.2Ru/h6*1H2;;/q;;;;;;2*+3/p-6
InChIKeyAOQXTNLYRQGSLC-UHFFFAOYSA-H
SMILES
SoftwareSMILES
CACTVS 3.385
OpenEye OEToolkits 3.1.0.0		O[Ru](O)(O)[Ru](O)(O)O
FormulaH6 O6 Ru2
NameRu2-(OH)6 cluster
ChEMBL
DrugBank
ZINC
PDB chain8bpu Chain AAA Residue 205 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8bpu Effect of Equatorial Ligand Substitution on the Reactivity with Proteins of Paddlewheel Diruthenium Complexes: Structural Studies.
Resolution1.81 Å
Binding residue
(original residue number in PDB)		D18 N19
Binding residue
(residue number reindexed from 1)		D18 N19
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.17: lysozyme.
Gene Ontology
Molecular Function
GO:0003796 lysozyme activity
GO:0005515 protein binding
GO:0016231 beta-N-acetylglucosaminidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0042802 identical protein binding
Biological Process
GO:0016998 cell wall macromolecule catabolic process
GO:0031640 killing of cells of another organism
GO:0042742 defense response to bacterium
GO:0050829 defense response to Gram-negative bacterium
GO:0050830 defense response to Gram-positive bacterium
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8bpu, PDBe:8bpu, PDBj:8bpu
PDBsum8bpu
PubMed36597851
UniProtP00698|LYSC_CHICK Lysozyme C (Gene Name=LYZ)

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