Structure of PDB 7ryd Chain AAA Binding Site BS02
Receptor Information
>7ryd Chain AAA (length=129) Species:
9031
(Gallus gallus) [
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KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGS
TDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVS
DGNGMNAWVAWRNRCKGTDVQAWIRGCRL
Ligand information
Ligand ID
NO3
InChI
InChI=1S/NO3/c2-1(3)4/q-1
InChIKey
NHNBFGGVMKEFGY-UHFFFAOYSA-N
SMILES
Software
SMILES
ACDLabs 10.04
CACTVS 3.341
[O-][N+]([O-])=O
OpenEye OEToolkits 1.5.0
[N+](=O)([O-])[O-]
Formula
N O3
Name
NITRATE ION
ChEMBL
CHEMBL186200
DrugBank
DB14049
ZINC
PDB chain
7ryd Chain AAA Residue 404 [
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Receptor-Ligand Complex Structure
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PDB
7ryd
Probing ion-binding at a protein interface: Modulation of protein properties by ionic liquids.
Resolution
1.18 Å
Binding residue
(original residue number in PDB)
S24 L25 G26 Q121 I124
Binding residue
(residue number reindexed from 1)
S24 L25 G26 Q121 I124
Annotation score
3
Enzymatic activity
Enzyme Commision number
3.2.1.17
: lysozyme.
Gene Ontology
Molecular Function
GO:0003796
lysozyme activity
GO:0005515
protein binding
GO:0016231
beta-N-acetylglucosaminidase activity
GO:0016798
hydrolase activity, acting on glycosyl bonds
GO:0042802
identical protein binding
Biological Process
GO:0016998
cell wall macromolecule catabolic process
GO:0031640
killing of cells of another organism
GO:0042742
defense response to bacterium
GO:0050829
defense response to Gram-negative bacterium
GO:0050830
defense response to Gram-positive bacterium
Cellular Component
GO:0005576
extracellular region
GO:0005615
extracellular space
GO:0005737
cytoplasm
GO:0005783
endoplasmic reticulum
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:7ryd
,
PDBe:7ryd
,
PDBj:7ryd
PDBsum
7ryd
PubMed
37480654
UniProt
P00698
|LYSC_CHICK Lysozyme C (Gene Name=LYZ)
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