Structure of PDB 6tvk Chain AAA Binding Site BS02

Receptor Information
>6tvk Chain AAA (length=660) Species: 49283 (Paenibacillus thiaminolyticus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRYRQVHLDFHTSEHISDIGRNFSKKNFQEMLQLGHVNSITVFAKCHHGW
AYFPSATNEIHPRLDFDLLGAQIEAAHEIGVKVPIYISVGFDEKLAWEKP
QWLMRDEADRMNWVDSFMKPGYHQFCLNTPYLDLVIEQVQEVVRKYDGDG
IFLDIVGERTCYCTTCLKQMQADGLDPHNKEDVIANGRRIYANYTTRIRE
AIDAIKPGLPVFHNAGHIHQGRRDLMGMNSHLELESLPTGGWGYDHFPLS
ARYAQPTGFHFLGMTGKFHTFWGEFGGYKHPNALRYETALSLANGARCSI
GDQLHPGGQMDRATYELIGKAYAEVEAKEAWCVNAVNLADVALLTVEAAG
VQQESGAMYSGKVDMGAVRMLLEGKILFDIVDLESDWSGYKVLILPDSIV
MKDTILPKVEAFLAAGGKVLASGRSGLNVELTRQMLPLGFTDSGLNPFRP
DYFRPLCDGMANLGEAAYVMYGDGRRIELTDGTELGRREDPYFNRQAFRF
CSHQHAPSSEQEGGPGMVESAQGIYIAWNVFEDYATKGSLILKEMVLFAL
RRLLGEQITLKTTLPAQGVTTLQHQAAERRYINHLLYASPVKRGERVEII
EDMIPLQQVEVQLQLPVTDVKRVYLAPQMTEIEFKASGGDVQFTVPQLEC
HQMVVVEYNE
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain6tvk Chain AAA Residue 702 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6tvk The first structure-function study of GH151 alpha-l-fucosidase uncovers new oligomerization pattern, active site complementation, and selective substrate specificity
Resolution2.1 Å
Binding residue
(original residue number in PDB)
C126 C161 C163 C166
Binding residue
(residue number reindexed from 1)
C126 C161 C163 C166
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004565 beta-galactosidase activity
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:6tvk, PDBe:6tvk, PDBj:6tvk
PDBsum6tvk
PubMed
UniProtK0JCW6

[Back to BioLiP]