Structure of PDB 9ex0 Chain A Binding Site BS02

Receptor Information
>9ex0 Chain A (length=129) Species: 9030 (Gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGS
TDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVS
DGNGMNAWVAWRNRCKGTDVQAWIRGCRL
Ligand information
Ligand IDA1ICR
InChIInChI=1S/51O.20V/q32*-2;19*-1;20*+4
InChIKeyUMGUOOQNHDXOEA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7[O-2]=[V+4]12[O-2][V+4]34(=[O-])[O-2][V+4]56(=[O-])[O-2][V+4]78(=[O-])[O-2]3[V+4]93(=[O-])[O-2]7[V+4]7(=[O-])[O-2][V+4]%10%11(=[O-])[O-2]9[V+4]9(=[O-])([O-2]43)[O-2]1[V+4]1(=[O-])([O-2]9%10)[O-2][V+4]3(=[O-])([O-2]%11)[O-2]4[V+4](=[O-])([O-2]7[V+4]7(=[O-])[O-2]8[V+4]89(=[O-])[O-2]7[V+4]4(=[O-])[O-2]3[V+4]3(=[O-])([O-2]8)[O-2]1[V+4]1(=[O-])[O-2]2[V+4](=[O-])([O-2]5[V+4](=[O-])([O-2]31)[O-2]69)[O-2][V+4](=[O-])(=[O-])([O-2])[O-2])[O-2][V+4](=[O-2])(=[O-2])([O-2])[O-2]
CACTVS 3.385[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O--].[O--].[O--].[O--].[V+4][O--][V+4]1[O--][V+4][O--][V+4]2[O--][V+4]3[O--][V+4][O--][V+4]4([O--][V+4]([O--][V+4])[O--][V+4](=[O--])=[O--])[O--][V+4]5[O--][V+4][O--][V+4][O--][V+4]([O--]3)[O--][V+4]([O--][V+4])([O--]1)[O--][V+4]6[O--][V+4]([O--]5)[O--][V+4]([O--]2)([O--][V+4](=[O--])[O--]6)[O--]4
FormulaO51 V20
NamePolyoxidovanadate complex;
VUF-6884
ChEMBL
DrugBank
ZINC
PDB chain9ex0 Chain A Residue 203 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB9ex0 Non-Covalent and Covalent Binding of New Mixed-Valence Cage-like Polyoxidovanadate Clusters to Lysozyme.
Resolution1.45 Å
Binding residue
(original residue number in PDB)
K1 A11 R14 H15 D87 T89
Binding residue
(residue number reindexed from 1)
K1 A11 R14 H15 D87 T89
Annotation score1
Gene Ontology
Molecular Function
GO:0003796 lysozyme activity
GO:0005515 protein binding
GO:0016231 beta-N-acetylglucosaminidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0042802 identical protein binding
Biological Process
GO:0016998 cell wall macromolecule catabolic process
GO:0031640 killing of cells of another organism
GO:0042742 defense response to bacterium
GO:0050829 defense response to Gram-negative bacterium
GO:0050830 defense response to Gram-positive bacterium
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:9ex0, PDBe:9ex0, PDBj:9ex0
PDBsum9ex0
PubMed38842919
UniProtP00698|LYSC_CHICK Lysozyme C (Gene Name=LYZ)

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